Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC42Q96M95 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.99■□□□□ 0.79
CCDC42Q96M95 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
CCDC42Q96M95 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
CCDC42Q96M95 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC42Q96M95 AP002982.1-201ENST00000492365 877 ntBASIC19.99■□□□□ 0.79
CCDC42Q96M95 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC42Q96M95 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.99■□□□□ 0.79
CCDC42Q96M95 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
CCDC42Q96M95 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
CCDC42Q96M95 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC42Q96M95 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC42Q96M95 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
CCDC42Q96M95 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CCDC42Q96M95 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
CCDC42Q96M95 HTR7P1-201ENST00000538670 1336 ntBASIC19.99■□□□□ 0.79
CCDC42Q96M95 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC42Q96M95 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
CCDC42Q96M95 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC42Q96M95 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC42Q96M95 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC42Q96M95 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC42Q96M95 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC42Q96M95 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 AC138028.4-201ENST00000564984 1845 ntBASIC19.98■□□□□ 0.79
CCDC42Q96M95 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC42Q96M95 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC42Q96M95 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 HLA-L-209ENST00000420110 1011 ntBASIC19.98■□□□□ 0.79
CCDC42Q96M95 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 RPS2P4-201ENST00000476944 856 ntBASIC19.98■□□□□ 0.79
CCDC42Q96M95 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC42Q96M95 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC42Q96M95 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC42Q96M95 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC42Q96M95 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC42Q96M95 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.98■□□□□ 0.79
CCDC42Q96M95 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC42Q96M95 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC42Q96M95 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC42Q96M95 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC42Q96M95 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC42Q96M95 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 KSR1P1-201ENST00000446298 240 ntBASIC19.97■□□□□ 0.79
CCDC42Q96M95 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC42Q96M95 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC42Q96M95 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 AL353708.3-201ENST00000610272 989 ntBASIC19.97■□□□□ 0.79
CCDC42Q96M95 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC42Q96M95 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC42Q96M95 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC42Q96M95 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC42Q96M95 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC42Q96M95 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC42Q96M95 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC42Q96M95 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC42Q96M95 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC42Q96M95 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms