Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 KRT18P1-202ENST00000452408 1331 ntBASIC5.71□□□□□ -1.49
SYNE1Q8NF91 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 FGF14-AS2-201ENST00000606448 1074 ntBASIC5.71□□□□□ -1.49
SYNE1Q8NF91 GOLGA6L5P-202ENST00000515341 1828 ntBASIC5.71□□□□□ -1.49
SYNE1Q8NF91 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
SYNE1Q8NF91 LBX2-AS1-202ENST00000603175 2083 ntBASIC5.71□□□□□ -1.5
SYNE1Q8NF91 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 OR6D1P-203ENST00000641209 4860 ntBASIC5.71□□□□□ -1.5
SYNE1Q8NF91 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 AP003041.3-201ENST00000527151 707 ntBASIC5.71□□□□□ -1.5
SYNE1Q8NF91 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 TREX1-205ENST00000625293 1783 ntBASIC5.71□□□□□ -1.5
SYNE1Q8NF91 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 ILF2-202ENST00000368681 726 ntTSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 AP001271.2-201ENST00000624018 1556 ntBASIC5.71□□□□□ -1.5
SYNE1Q8NF91 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 GPAT2P1-201ENST00000444924 1672 ntBASIC5.71□□□□□ -1.5
SYNE1Q8NF91 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 BUB3-202ENST00000368859 667 ntTSL 3 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 EMBP1-201ENST00000458200 901 ntBASIC5.71□□□□□ -1.5
SYNE1Q8NF91 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 AC099778.1-201ENST00000568593 1911 ntBASIC5.71□□□□□ -1.5
SYNE1Q8NF91 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC5.71□□□□□ -1.5
SYNE1Q8NF91 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms