Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 MIR3621-201ENST00000580529 85 ntBASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 AC099063.4-201ENST00000641099 1602 ntBASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CLRN3Q8NCR9 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 KRT8P17-201ENST00000453110 1448 ntBASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC14.78□□□□□ -0.04
CLRN3Q8NCR9 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 SYT6-210ENST00000641643 1587 ntBASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.77□□□□□ -0.04
CLRN3Q8NCR9 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC14.77□□□□□ -0.05
CLRN3Q8NCR9 AC092171.4-201ENST00000609130 632 ntBASIC14.77□□□□□ -0.05
CLRN3Q8NCR9 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CLRN3Q8NCR9 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
CLRN3Q8NCR9 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
CLRN3Q8NCR9 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
CLRN3Q8NCR9 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CLRN3Q8NCR9 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CLRN3Q8NCR9 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC14.77□□□□□ -0.05
CLRN3Q8NCR9 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CLRN3Q8NCR9 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CLRN3Q8NCR9 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
CLRN3Q8NCR9 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms