Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC15.5■□□□□ 0.07
ABCA1O95477 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA1O95477 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA1O95477 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA1O95477 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA1O95477 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
ABCA1O95477 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
ABCA1O95477 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA1O95477 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA1O95477 CIB2-208ENST00000560618 804 ntTSL 2 BASIC15.5■□□□□ 0.07
ABCA1O95477 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC15.5■□□□□ 0.07
ABCA1O95477 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC15.5■□□□□ 0.07
ABCA1O95477 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC15.5■□□□□ 0.07
ABCA1O95477 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC15.5■□□□□ 0.07
ABCA1O95477 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC15.5■□□□□ 0.07
ABCA1O95477 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
ABCA1O95477 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
ABCA1O95477 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA1O95477 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
ABCA1O95477 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA1O95477 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC15.5■□□□□ 0.07
ABCA1O95477 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC15.5■□□□□ 0.07
ABCA1O95477 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA1O95477 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA1O95477 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA1O95477 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA1O95477 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA1O95477 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC15.5■□□□□ 0.07
ABCA1O95477 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.5■□□□□ 0.07
ABCA1O95477 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC15.5■□□□□ 0.07
ABCA1O95477 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
ABCA1O95477 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
ABCA1O95477 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC15.49■□□□□ 0.07
ABCA1O95477 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
ABCA1O95477 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
ABCA1O95477 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.49■□□□□ 0.07
ABCA1O95477 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC15.49■□□□□ 0.07
ABCA1O95477 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC15.49■□□□□ 0.07
ABCA1O95477 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC15.49■□□□□ 0.07
ABCA1O95477 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
ABCA1O95477 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
ABCA1O95477 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
ABCA1O95477 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA1O95477 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.48■□□□□ 0.07
ABCA1O95477 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC15.48■□□□□ 0.07
ABCA1O95477 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC15.48■□□□□ 0.07
ABCA1O95477 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC15.48■□□□□ 0.07
ABCA1O95477 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC15.48■□□□□ 0.07
ABCA1O95477 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.48■□□□□ 0.07
ABCA1O95477 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA1O95477 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA1O95477 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC15.48■□□□□ 0.07
ABCA1O95477 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA1O95477 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC15.48■□□□□ 0.07
ABCA1O95477 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC15.48■□□□□ 0.07
ABCA1O95477 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA1O95477 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC15.48■□□□□ 0.07
ABCA1O95477 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA1O95477 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA1O95477 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC15.48■□□□□ 0.07
ABCA1O95477 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA1O95477 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC15.48■□□□□ 0.07
ABCA1O95477 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA1O95477 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA1O95477 AC091304.2-201ENST00000564639 760 ntBASIC15.48■□□□□ 0.07
ABCA1O95477 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC15.48■□□□□ 0.07
ABCA1O95477 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA1O95477 AC116562.4-201ENST00000641316 2276 ntBASIC15.48■□□□□ 0.07
ABCA1O95477 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
ABCA1O95477 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA1O95477 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA1O95477 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA1O95477 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
ABCA1O95477 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC15.48■□□□□ 0.07
ABCA1O95477 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
ABCA1O95477 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
ABCA1O95477 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
ABCA1O95477 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC15.48■□□□□ 0.07
ABCA1O95477 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
ABCA1O95477 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
ABCA1O95477 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
ABCA1O95477 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
ABCA1O95477 LINC00265-3P-201ENST00000447588 903 ntBASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms