Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
PCF11O94913 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC28.79■■■□□ 2.2
PCF11O94913 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
PCF11O94913 TEX30-205ENST00000376029 959 ntTSL 2 BASIC28.79■■■□□ 2.2
PCF11O94913 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC28.79■■■□□ 2.2
PCF11O94913 GUSBP12-201ENST00000513727 720 ntBASIC28.79■■■□□ 2.2
PCF11O94913 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC28.79■■■□□ 2.2
PCF11O94913 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
PCF11O94913 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
PCF11O94913 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC28.78■■■□□ 2.2
PCF11O94913 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC28.78■■■□□ 2.2
PCF11O94913 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
PCF11O94913 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
PCF11O94913 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC28.78■■■□□ 2.2
PCF11O94913 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC28.78■■■□□ 2.2
PCF11O94913 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
PCF11O94913 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
PCF11O94913 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC28.78■■■□□ 2.2
PCF11O94913 MIR1233-2-201ENST00000408138 82 ntBASIC28.78■■■□□ 2.2
PCF11O94913 MIR1233-1-201ENST00000408722 82 ntBASIC28.78■■■□□ 2.2
PCF11O94913 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
PCF11O94913 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC28.78■■■□□ 2.2
PCF11O94913 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
PCF11O94913 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC28.78■■■□□ 2.2
PCF11O94913 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
PCF11O94913 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
PCF11O94913 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC28.78■■■□□ 2.2
PCF11O94913 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
PCF11O94913 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
PCF11O94913 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
PCF11O94913 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
PCF11O94913 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
PCF11O94913 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC28.77■■■□□ 2.2
PCF11O94913 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
PCF11O94913 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
PCF11O94913 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC28.77■■■□□ 2.2
PCF11O94913 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC28.77■■■□□ 2.2
PCF11O94913 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
PCF11O94913 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
PCF11O94913 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC28.77■■■□□ 2.2
PCF11O94913 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
PCF11O94913 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
PCF11O94913 AC096582.2-201ENST00000510860 516 ntBASIC28.77■■■□□ 2.2
PCF11O94913 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC28.77■■■□□ 2.2
PCF11O94913 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC28.77■■■□□ 2.2
PCF11O94913 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.2
PCF11O94913 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
PCF11O94913 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
PCF11O94913 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
PCF11O94913 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PCF11O94913 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PCF11O94913 CCNC-219ENST00000627680 896 ntTSL 5 BASIC28.76■■■□□ 2.19
PCF11O94913 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC28.76■■■□□ 2.19
PCF11O94913 ADK-206ENST00000541550 2222 ntTSL 2 BASIC28.76■■■□□ 2.19
PCF11O94913 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC28.76■■■□□ 2.19
PCF11O94913 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
PCF11O94913 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PCF11O94913 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PCF11O94913 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PCF11O94913 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PCF11O94913 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.19
PCF11O94913 EMD-201ENST00000369835 966 ntTSL 3 BASIC28.75■■■□□ 2.19
PCF11O94913 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC28.75■■■□□ 2.19
PCF11O94913 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC28.75■■■□□ 2.19
PCF11O94913 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC28.75■■■□□ 2.19
PCF11O94913 IGHV3-41-201ENST00000613121 348 ntBASIC28.75■■■□□ 2.19
PCF11O94913 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC28.75■■■□□ 2.19
PCF11O94913 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
PCF11O94913 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
PCF11O94913 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC28.75■■■□□ 2.19
PCF11O94913 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
PCF11O94913 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
PCF11O94913 ANO7L1-203ENST00000602586 1720 ntBASIC28.75■■■□□ 2.19
PCF11O94913 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
PCF11O94913 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC28.75■■■□□ 2.19
PCF11O94913 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
PCF11O94913 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
PCF11O94913 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC28.75■■■□□ 2.19
PCF11O94913 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
PCF11O94913 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
PCF11O94913 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC28.75■■■□□ 2.19
PCF11O94913 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC28.75■■■□□ 2.19
PCF11O94913 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC28.75■■■□□ 2.19
PCF11O94913 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC28.75■■■□□ 2.19
PCF11O94913 AL662844.1-201ENST00000546340 181 ntBASIC28.75■■■□□ 2.19
PCF11O94913 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC28.75■■■□□ 2.19
PCF11O94913 AC091304.2-201ENST00000564639 760 ntBASIC28.75■■■□□ 2.19
PCF11O94913 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC28.74■■■□□ 2.19
PCF11O94913 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC28.74■■■□□ 2.19
PCF11O94913 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC28.74■■■□□ 2.19
PCF11O94913 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
PCF11O94913 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
PCF11O94913 MYLKP1-201ENST00000509077 1580 ntBASIC28.74■■■□□ 2.19
PCF11O94913 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC28.74■■■□□ 2.19
PCF11O94913 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC28.74■■■□□ 2.19
PCF11O94913 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC28.74■■■□□ 2.19
PCF11O94913 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC28.74■■■□□ 2.19
PCF11O94913 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
PCF11O94913 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC28.74■■■□□ 2.19
PCF11O94913 BX640515.1-201ENST00000617215 977 ntBASIC28.74■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms