Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
CDKL5O76039 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CDKL5O76039 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.03
CDKL5O76039 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.03
CDKL5O76039 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CDKL5O76039 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CDKL5O76039 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CDKL5O76039 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDKL5O76039 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC21.51■■□□□ 1.03
CDKL5O76039 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CDKL5O76039 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC21.51■■□□□ 1.03
CDKL5O76039 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDKL5O76039 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDKL5O76039 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
CDKL5O76039 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CDKL5O76039 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC21.51■■□□□ 1.03
CDKL5O76039 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDKL5O76039 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDKL5O76039 ECEL1P2-202ENST00000465689 757 ntBASIC21.51■■□□□ 1.03
CDKL5O76039 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.51■■□□□ 1.03
CDKL5O76039 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.51■■□□□ 1.03
CDKL5O76039 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.51■■□□□ 1.03
CDKL5O76039 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.51■■□□□ 1.03
CDKL5O76039 AC112497.1-201ENST00000624824 639 ntBASIC21.51■■□□□ 1.03
CDKL5O76039 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDKL5O76039 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDKL5O76039 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDKL5O76039 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDKL5O76039 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDKL5O76039 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDKL5O76039 KRT18P22-201ENST00000402024 1347 ntBASIC21.51■■□□□ 1.03
CDKL5O76039 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDKL5O76039 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDKL5O76039 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDKL5O76039 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC21.5■■□□□ 1.03
CDKL5O76039 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDKL5O76039 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDKL5O76039 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.5■■□□□ 1.03
CDKL5O76039 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDKL5O76039 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.5■■□□□ 1.03
CDKL5O76039 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC21.5■■□□□ 1.03
CDKL5O76039 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDKL5O76039 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
CDKL5O76039 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
CDKL5O76039 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.5■■□□□ 1.03
CDKL5O76039 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC21.5■■□□□ 1.03
CDKL5O76039 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.5■■□□□ 1.03
CDKL5O76039 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDKL5O76039 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.5■■□□□ 1.03
CDKL5O76039 AC009065.1-201ENST00000564055 1225 ntBASIC21.5■■□□□ 1.03
CDKL5O76039 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.5■■□□□ 1.03
CDKL5O76039 NAT14-202ENST00000587400 416 ntTSL 5 BASIC21.5■■□□□ 1.03
CDKL5O76039 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDKL5O76039 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDKL5O76039 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.5■■□□□ 1.03
CDKL5O76039 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
CDKL5O76039 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDKL5O76039 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
CDKL5O76039 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDKL5O76039 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDKL5O76039 AL163051.1-201ENST00000569214 1512 ntBASIC21.5■■□□□ 1.03
CDKL5O76039 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.49■■□□□ 1.03
CDKL5O76039 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC21.49■■□□□ 1.03
CDKL5O76039 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.49■■□□□ 1.03
CDKL5O76039 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.49■■□□□ 1.03
CDKL5O76039 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CDKL5O76039 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.49■■□□□ 1.03
CDKL5O76039 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CDKL5O76039 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
CDKL5O76039 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.49■■□□□ 1.03
CDKL5O76039 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC21.49■■□□□ 1.03
CDKL5O76039 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.49■■□□□ 1.03
CDKL5O76039 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDKL5O76039 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDKL5O76039 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC21.48■■□□□ 1.03
CDKL5O76039 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
CDKL5O76039 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDKL5O76039 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDKL5O76039 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CDKL5O76039 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDKL5O76039 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDKL5O76039 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDKL5O76039 MIR149-201ENST00000384879 89 ntBASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms