Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 KRT18P22-201ENST00000402024 1347 ntBASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCSER1Q9C0I3 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 ESPNP-201ENST00000270691 2015 ntBASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 AC009947.2-201ENST00000444014 672 ntBASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 AC012306.2-201ENST00000609350 630 ntBASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 AC009102.3-201ENST00000623118 1491 ntBASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
CCSER1Q9C0I3 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 NEK4P2-201ENST00000580004 1012 ntBASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 AC097493.4-201ENST00000641197 219 ntBASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCSER1Q9C0I3 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCSER1Q9C0I3 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CCSER1Q9C0I3 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.71■□□□□ 0.91
CCSER1Q9C0I3 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCSER1Q9C0I3 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CCSER1Q9C0I3 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCSER1Q9C0I3 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.71■□□□□ 0.91
CCSER1Q9C0I3 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCSER1Q9C0I3 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.71■□□□□ 0.91
CCSER1Q9C0I3 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCSER1Q9C0I3 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CCSER1Q9C0I3 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCSER1Q9C0I3 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms