Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.76■□□□□ 0.75
PAAF1Q9BRP4 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.76■□□□□ 0.75
PAAF1Q9BRP4 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
PAAF1Q9BRP4 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.76■□□□□ 0.75
PAAF1Q9BRP4 GPR32P1-201ENST00000601788 811 ntBASIC19.76■□□□□ 0.75
PAAF1Q9BRP4 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.76■□□□□ 0.75
PAAF1Q9BRP4 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
PAAF1Q9BRP4 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PAAF1Q9BRP4 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PAAF1Q9BRP4 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PAAF1Q9BRP4 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
PAAF1Q9BRP4 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PAAF1Q9BRP4 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
PAAF1Q9BRP4 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PAAF1Q9BRP4 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 AP000867.3-201ENST00000524675 377 ntBASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PAAF1Q9BRP4 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
PAAF1Q9BRP4 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 IGHV3-41-201ENST00000613121 348 ntBASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 AC005082.1-201ENST00000413042 2259 ntBASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PAAF1Q9BRP4 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 AP000593.1-201ENST00000393668 712 ntBASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PAAF1Q9BRP4 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms