Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
VPS25Q9BRG1 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
VPS25Q9BRG1 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
VPS25Q9BRG1 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
VPS25Q9BRG1 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
VPS25Q9BRG1 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
VPS25Q9BRG1 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC12.96□□□□□ -0.33
VPS25Q9BRG1 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
VPS25Q9BRG1 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC12.96□□□□□ -0.33
VPS25Q9BRG1 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC12.96□□□□□ -0.34
VPS25Q9BRG1 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
VPS25Q9BRG1 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
VPS25Q9BRG1 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
VPS25Q9BRG1 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC12.96□□□□□ -0.34
VPS25Q9BRG1 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
VPS25Q9BRG1 CICP13-201ENST00000422015 2789 ntBASIC12.96□□□□□ -0.34
VPS25Q9BRG1 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
VPS25Q9BRG1 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
VPS25Q9BRG1 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
VPS25Q9BRG1 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
VPS25Q9BRG1 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 FP700111.2-201ENST00000619190 1892 ntBASIC12.95□□□□□ -0.34
VPS25Q9BRG1 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 MADD-208ENST00000405573 1823 ntTSL 5 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 LBH-205ENST00000407930 756 ntTSL 2 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 AC009086.3-201ENST00000623486 1008 ntBASIC12.95□□□□□ -0.34
VPS25Q9BRG1 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
VPS25Q9BRG1 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 ST20-AS1-201ENST00000560255 4223 ntBASIC12.94□□□□□ -0.34
VPS25Q9BRG1 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 MIR3648-2-201ENST00000581792 180 ntBASIC12.94□□□□□ -0.34
VPS25Q9BRG1 MIR3648-1-201ENST00000615959 180 ntBASIC12.94□□□□□ -0.34
VPS25Q9BRG1 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 TMEM179-206ENST00000616017 1645 ntBASIC12.94□□□□□ -0.34
VPS25Q9BRG1 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC12.94□□□□□ -0.34
VPS25Q9BRG1 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms