Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 AL161938.1-201ENST00000569833 2180 ntBASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
USHBP1Q8N6Y0 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 LSM5-204ENST00000409909 740 ntTSL 2 BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USHBP1Q8N6Y0 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 HES2-202ENST00000377836 507 ntTSL 2 BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 AC106795.1-205ENST00000512851 1056 ntBASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 AF238378.1-201ENST00000526806 358 ntBASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 ABR-217ENST00000572441 563 ntTSL 4 BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 TP73-AS1-207ENST00000624167 988 ntBASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 CCNC-219ENST00000627680 896 ntTSL 5 BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USHBP1Q8N6Y0 AL163051.1-201ENST00000569214 1512 ntBASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 CDV3-207ENST00000508481 661 ntTSL 3 BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
USHBP1Q8N6Y0 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
USHBP1Q8N6Y0 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC24.39■■□□□ 1.5
USHBP1Q8N6Y0 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.5
USHBP1Q8N6Y0 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
USHBP1Q8N6Y0 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
USHBP1Q8N6Y0 AC073130.3-201ENST00000624389 2278 ntBASIC24.39■■□□□ 1.5
USHBP1Q8N6Y0 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 IGHV3OR16-7-201ENST00000604106 360 ntBASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 VPS51-217ENST00000639871 243 ntTSL 5 BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
USHBP1Q8N6Y0 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms