Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC21.84■■□□□ 1.09
HLA-DOAP06340 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
HLA-DOAP06340 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.84■■□□□ 1.09
HLA-DOAP06340 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.84■■□□□ 1.09
HLA-DOAP06340 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HLA-DOAP06340 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HLA-DOAP06340 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.84■■□□□ 1.09
HLA-DOAP06340 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
HLA-DOAP06340 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
HLA-DOAP06340 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
HLA-DOAP06340 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
HLA-DOAP06340 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
HLA-DOAP06340 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.83■■□□□ 1.09
HLA-DOAP06340 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.83■■□□□ 1.09
HLA-DOAP06340 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
HLA-DOAP06340 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HLA-DOAP06340 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
HLA-DOAP06340 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HLA-DOAP06340 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HLA-DOAP06340 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
HLA-DOAP06340 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC21.83■■□□□ 1.09
HLA-DOAP06340 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.09
HLA-DOAP06340 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
HLA-DOAP06340 PPOX-214ENST00000535223 664 ntTSL 3 BASIC21.83■■□□□ 1.09
HLA-DOAP06340 TK1-205ENST00000590862 642 ntTSL 3 BASIC21.83■■□□□ 1.09
HLA-DOAP06340 IGHV3-41-201ENST00000613121 348 ntBASIC21.83■■□□□ 1.09
HLA-DOAP06340 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.83■■□□□ 1.09
HLA-DOAP06340 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HLA-DOAP06340 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
HLA-DOAP06340 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC21.83■■□□□ 1.08
HLA-DOAP06340 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
HLA-DOAP06340 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
HLA-DOAP06340 KRT89P-201ENST00000620027 1478 ntBASIC21.83■■□□□ 1.08
HLA-DOAP06340 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
HLA-DOAP06340 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.83■■□□□ 1.08
HLA-DOAP06340 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.83■■□□□ 1.08
HLA-DOAP06340 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.82■■□□□ 1.08
HLA-DOAP06340 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC21.82■■□□□ 1.08
HLA-DOAP06340 TOB2P1-201ENST00000469761 992 ntBASIC21.82■■□□□ 1.08
HLA-DOAP06340 SKP2-204ENST00000508514 821 ntTSL 3 BASIC21.82■■□□□ 1.08
HLA-DOAP06340 AP000867.3-201ENST00000524675 377 ntBASIC21.82■■□□□ 1.08
HLA-DOAP06340 MPI-205ENST00000562606 1052 ntTSL 3 BASIC21.82■■□□□ 1.08
HLA-DOAP06340 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC21.82■■□□□ 1.08
HLA-DOAP06340 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.82■■□□□ 1.08
HLA-DOAP06340 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HLA-DOAP06340 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HLA-DOAP06340 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.81■■□□□ 1.08
HLA-DOAP06340 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HLA-DOAP06340 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HLA-DOAP06340 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HLA-DOAP06340 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HLA-DOAP06340 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HLA-DOAP06340 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
HLA-DOAP06340 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HLA-DOAP06340 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HLA-DOAP06340 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC21.81■■□□□ 1.08
HLA-DOAP06340 NUS1P1-201ENST00000446295 882 ntBASIC21.81■■□□□ 1.08
HLA-DOAP06340 IRF5-214ENST00000613821 595 ntTSL 5 BASIC21.81■■□□□ 1.08
HLA-DOAP06340 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HLA-DOAP06340 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
HLA-DOAP06340 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HLA-DOAP06340 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HLA-DOAP06340 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
HLA-DOAP06340 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.81■■□□□ 1.08
HLA-DOAP06340 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HLA-DOAP06340 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.8■■□□□ 1.08
HLA-DOAP06340 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.8■■□□□ 1.08
HLA-DOAP06340 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
HLA-DOAP06340 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC21.8■■□□□ 1.08
HLA-DOAP06340 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DOAP06340 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
HLA-DOAP06340 AC116562.4-201ENST00000641316 2276 ntBASIC21.8■■□□□ 1.08
HLA-DOAP06340 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.8■■□□□ 1.08
HLA-DOAP06340 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DOAP06340 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
HLA-DOAP06340 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DOAP06340 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.8■■□□□ 1.08
HLA-DOAP06340 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DOAP06340 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC21.8■■□□□ 1.08
HLA-DOAP06340 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DOAP06340 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC21.8■■□□□ 1.08
HLA-DOAP06340 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DOAP06340 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HLA-DOAP06340 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms