Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.12■□□□□ 0.33
NKX2-2O95096 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
NKX2-2O95096 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
NKX2-2O95096 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NKX2-2O95096 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NKX2-2O95096 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.12■□□□□ 0.33
NKX2-2O95096 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NKX2-2O95096 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
NKX2-2O95096 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
NKX2-2O95096 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NKX2-2O95096 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.12■□□□□ 0.33
NKX2-2O95096 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NKX2-2O95096 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.12■□□□□ 0.33
NKX2-2O95096 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NKX2-2O95096 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-2O95096 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-2O95096 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-2O95096 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-2O95096 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
NKX2-2O95096 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
NKX2-2O95096 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-2O95096 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-2O95096 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-2O95096 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-2O95096 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.11■□□□□ 0.33
NKX2-2O95096 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-2O95096 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-2O95096 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-2O95096 ECEL1P3-201ENST00000427961 737 ntBASIC17.11■□□□□ 0.33
NKX2-2O95096 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-2O95096 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.11■□□□□ 0.33
NKX2-2O95096 MIR3180-4-201ENST00000582223 153 ntBASIC17.11■□□□□ 0.33
NKX2-2O95096 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.11■□□□□ 0.33
NKX2-2O95096 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NKX2-2O95096 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
NKX2-2O95096 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
NKX2-2O95096 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
NKX2-2O95096 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.11■□□□□ 0.33
NKX2-2O95096 AC097493.4-201ENST00000641197 219 ntBASIC17.11■□□□□ 0.33
NKX2-2O95096 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.11■□□□□ 0.33
NKX2-2O95096 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
NKX2-2O95096 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.11■□□□□ 0.33
NKX2-2O95096 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.11■□□□□ 0.33
NKX2-2O95096 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
NKX2-2O95096 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.11■□□□□ 0.33
NKX2-2O95096 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
NKX2-2O95096 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.1■□□□□ 0.33
NKX2-2O95096 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.1■□□□□ 0.33
NKX2-2O95096 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
NKX2-2O95096 MIR149-201ENST00000384879 89 ntBASIC17.1■□□□□ 0.33
NKX2-2O95096 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 SLC25A3P1-201ENST00000443844 931 ntBASIC17.1■□□□□ 0.33
NKX2-2O95096 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.1■□□□□ 0.33
NKX2-2O95096 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.1■□□□□ 0.33
NKX2-2O95096 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.1■□□□□ 0.33
NKX2-2O95096 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 AC133561.5-201ENST00000635547 218 ntBASIC17.1■□□□□ 0.33
NKX2-2O95096 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
NKX2-2O95096 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
NKX2-2O95096 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.1■□□□□ 0.33
NKX2-2O95096 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.1■□□□□ 0.33
NKX2-2O95096 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
NKX2-2O95096 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.1■□□□□ 0.33
NKX2-2O95096 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NKX2-2O95096 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.09■□□□□ 0.33
NKX2-2O95096 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-2O95096 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-2O95096 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
NKX2-2O95096 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-2O95096 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-2O95096 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.09■□□□□ 0.33
NKX2-2O95096 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
NKX2-2O95096 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.09■□□□□ 0.33
NKX2-2O95096 AC009065.1-201ENST00000564055 1225 ntBASIC17.09■□□□□ 0.33
NKX2-2O95096 AL138966.2-201ENST00000621997 464 ntBASIC17.09■□□□□ 0.33
NKX2-2O95096 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.09■□□□□ 0.33
NKX2-2O95096 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-2O95096 AC009102.3-201ENST00000623118 1491 ntBASIC17.09■□□□□ 0.33
NKX2-2O95096 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.09■□□□□ 0.33
NKX2-2O95096 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.09■□□□□ 0.33
NKX2-2O95096 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.09■□□□□ 0.33
NKX2-2O95096 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-2O95096 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.09■□□□□ 0.33
NKX2-2O95096 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-2O95096 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.09■□□□□ 0.33
NKX2-2O95096 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NKX2-2O95096 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms