Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.84■□□□□ 0.29
SSX4O60224 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
SSX4O60224 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 MMP23A-201ENST00000234610 1017 ntBASIC16.83■□□□□ 0.28
SSX4O60224 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.83■□□□□ 0.28
SSX4O60224 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC16.83■□□□□ 0.28
SSX4O60224 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
SSX4O60224 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.83■□□□□ 0.28
SSX4O60224 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 AL512353.2-201ENST00000448759 1962 ntBASIC16.83■□□□□ 0.28
SSX4O60224 AP002982.1-201ENST00000492365 877 ntBASIC16.83■□□□□ 0.28
SSX4O60224 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC16.83■□□□□ 0.28
SSX4O60224 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SSX4O60224 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC16.83■□□□□ 0.28
SSX4O60224 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC16.83■□□□□ 0.28
SSX4O60224 AC073195.1-201ENST00000607241 877 ntBASIC16.83■□□□□ 0.28
SSX4O60224 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
SSX4O60224 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSX4O60224 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.82■□□□□ 0.28
SSX4O60224 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.82■□□□□ 0.28
SSX4O60224 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 ESPNP-201ENST00000270691 2015 ntBASIC16.82■□□□□ 0.28
SSX4O60224 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SSX4O60224 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 TEX21P-204ENST00000641479 1693 ntBASIC16.82■□□□□ 0.28
SSX4O60224 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
SSX4O60224 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SSX4O60224 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC16.82■□□□□ 0.28
SSX4O60224 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.82■□□□□ 0.28
SSX4O60224 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SSX4O60224 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SSX4O60224 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.82■□□□□ 0.28
SSX4O60224 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.82■□□□□ 0.28
SSX4O60224 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SSX4O60224 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.82■□□□□ 0.28
SSX4O60224 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.82■□□□□ 0.28
SSX4O60224 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.82■□□□□ 0.28
SSX4O60224 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 LINC00896-202ENST00000609602 2128 ntBASIC16.82■□□□□ 0.28
SSX4O60224 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
SSX4O60224 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSX4O60224 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.82■□□□□ 0.28
SSX4O60224 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC16.81■□□□□ 0.28
SSX4O60224 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
SSX4O60224 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SSX4O60224 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
SSX4O60224 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC16.81■□□□□ 0.28
SSX4O60224 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.81■□□□□ 0.28
SSX4O60224 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
SSX4O60224 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 AC097493.4-201ENST00000641197 219 ntBASIC16.81■□□□□ 0.28
SSX4O60224 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.81■□□□□ 0.28
SSX4O60224 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.81■□□□□ 0.28
SSX4O60224 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSX4O60224 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.81■□□□□ 0.28
SSX4O60224 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms