Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.41■□□□□ 0.22
SGCEO43556 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SGCEO43556 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SGCEO43556 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SGCEO43556 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.4■□□□□ 0.22
SGCEO43556 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
SGCEO43556 WIZP1-201ENST00000531444 2299 ntBASIC16.4■□□□□ 0.22
SGCEO43556 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.4■□□□□ 0.22
SGCEO43556 MTMR9LP-203ENST00000426597 1545 ntBASIC16.4■□□□□ 0.22
SGCEO43556 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
SGCEO43556 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SGCEO43556 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SGCEO43556 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SGCEO43556 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SGCEO43556 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SGCEO43556 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SGCEO43556 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SGCEO43556 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.4■□□□□ 0.22
SGCEO43556 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SGCEO43556 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC16.4■□□□□ 0.22
SGCEO43556 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.4■□□□□ 0.22
SGCEO43556 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
SGCEO43556 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.4■□□□□ 0.22
SGCEO43556 MIR4497-201ENST00000583208 89 ntBASIC16.4■□□□□ 0.22
SGCEO43556 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
SGCEO43556 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.4■□□□□ 0.22
SGCEO43556 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SGCEO43556 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SGCEO43556 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SGCEO43556 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SGCEO43556 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SGCEO43556 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SGCEO43556 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SGCEO43556 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.4■□□□□ 0.22
SGCEO43556 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.4■□□□□ 0.22
SGCEO43556 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SGCEO43556 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.4■□□□□ 0.22
SGCEO43556 HTR7P1-202ENST00000624664 4411 ntBASIC16.39■□□□□ 0.22
SGCEO43556 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
SGCEO43556 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.39■□□□□ 0.21
SGCEO43556 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.39■□□□□ 0.21
SGCEO43556 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.39■□□□□ 0.21
SGCEO43556 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.39■□□□□ 0.21
SGCEO43556 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.39■□□□□ 0.21
SGCEO43556 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
SGCEO43556 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.39■□□□□ 0.21
SGCEO43556 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
SGCEO43556 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.39■□□□□ 0.21
SGCEO43556 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SGCEO43556 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SGCEO43556 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.39■□□□□ 0.21
SGCEO43556 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SGCEO43556 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
SGCEO43556 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.39■□□□□ 0.21
SGCEO43556 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
SGCEO43556 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.39■□□□□ 0.21
SGCEO43556 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.39■□□□□ 0.21
SGCEO43556 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.39■□□□□ 0.21
SGCEO43556 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.39■□□□□ 0.21
SGCEO43556 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.39■□□□□ 0.21
SGCEO43556 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SGCEO43556 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SGCEO43556 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.38■□□□□ 0.21
SGCEO43556 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.38■□□□□ 0.21
SGCEO43556 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SGCEO43556 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SGCEO43556 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.38■□□□□ 0.21
SGCEO43556 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
SGCEO43556 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.38■□□□□ 0.21
SGCEO43556 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SGCEO43556 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SGCEO43556 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SGCEO43556 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SGCEO43556 AP000525.1-201ENST00000608286 694 ntBASIC16.38■□□□□ 0.21
SGCEO43556 AC008622.2-201ENST00000617006 1229 ntBASIC16.38■□□□□ 0.21
SGCEO43556 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SGCEO43556 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SGCEO43556 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms