Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 AL645608.8-201ENST00000606034 2086 ntBASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 TUBB8P6-201ENST00000436895 1288 ntBASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 AC124067.4-201ENST00000519691 2379 ntBASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
USH1CQ9Y6N9 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.49■□□□□ 0.55
USH1CQ9Y6N9 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
USH1CQ9Y6N9 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.47■□□□□ 0.55
USH1CQ9Y6N9 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms