Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 CRYGFP-201ENST00000418459 633 ntBASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 MIR4785-201ENST00000585005 73 ntBASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 AP000997.3-201ENST00000623333 2250 ntBASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PCDHGA11Q9Y5H2 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 AP005242.2-201ENST00000580065 1175 ntBASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.02■□□□□ 0.48
PCDHGA11Q9Y5H2 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.02■□□□□ 0.47
PCDHGA11Q9Y5H2 AL357033.4-201ENST00000617703 1807 ntBASIC18.02■□□□□ 0.47
PCDHGA11Q9Y5H2 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.47
PCDHGA11Q9Y5H2 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.02■□□□□ 0.47
PCDHGA11Q9Y5H2 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.02■□□□□ 0.47
PCDHGA11Q9Y5H2 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.02■□□□□ 0.47
PCDHGA11Q9Y5H2 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 UNC93B2-201ENST00000285383 730 ntBASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA11Q9Y5H2 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 AC073592.3-201ENST00000625118 1834 ntBASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 AC112777.1-201ENST00000540175 1423 ntBASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 AC068880.1-201ENST00000507289 2297 ntBASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 TBC1D3P2-202ENST00000577902 1649 ntBASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA11Q9Y5H2 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms