Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 HMGA1P5-201ENST00000412453 271 ntBASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
AP4E1Q9UPM8 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
AP4E1Q9UPM8 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
AP4E1Q9UPM8 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.27■□□□□ 0.67
AP4E1Q9UPM8 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.27■□□□□ 0.67
AP4E1Q9UPM8 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.27■□□□□ 0.67
AP4E1Q9UPM8 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
AP4E1Q9UPM8 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
AP4E1Q9UPM8 KRT18P22-201ENST00000402024 1347 ntBASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 KRT8P50-201ENST00000562022 1438 ntBASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 NEFHP1-201ENST00000412845 2629 ntBASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 AP000593.1-201ENST00000393668 712 ntBASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 AC145285.6-201ENST00000604632 637 ntBASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 AC073912.3-201ENST00000624414 853 ntBASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
AP4E1Q9UPM8 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 KRT18P23-201ENST00000435622 1283 ntBASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 HOXB1-202ENST00000577092 1414 ntBASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
AP4E1Q9UPM8 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
AP4E1Q9UPM8 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms