Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 GPAT2P1-201ENST00000444924 1672 ntBASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 AC091076.1-201ENST00000610741 619 ntBASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 AL358472.4-201ENST00000633140 710 ntBASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.9■□□□□ 0.46
CLIP3Q96DZ5 AC116562.4-201ENST00000641316 2276 ntBASIC17.89■□□□□ 0.46
CLIP3Q96DZ5 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.89■□□□□ 0.46
CLIP3Q96DZ5 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
CLIP3Q96DZ5 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 AL671277.2-201ENST00000458060 996 ntBASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLIP3Q96DZ5 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 MCCD1P1-208ENST00000445732 328 ntBASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 GCSHP2-201ENST00000560971 527 ntBASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
CLIP3Q96DZ5 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLIP3Q96DZ5 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms