Protein–RNA interactions for Protein: Q12824

SMARCB1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, humanhuman

Predictions only

Length 385 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1Q12824 AL390719.2-201ENST00000606993 987 ntBASIC19.47■□□□□ 0.71
SMARCB1Q12824 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.47■□□□□ 0.71
SMARCB1Q12824 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.47■□□□□ 0.71
SMARCB1Q12824 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCB1Q12824 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.47■□□□□ 0.71
SMARCB1Q12824 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.47■□□□□ 0.71
SMARCB1Q12824 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.47■□□□□ 0.71
SMARCB1Q12824 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCB1Q12824 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCB1Q12824 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCB1Q12824 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCB1Q12824 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCB1Q12824 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCB1Q12824 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCB1Q12824 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCB1Q12824 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCB1Q12824 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCB1Q12824 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCB1Q12824 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCB1Q12824 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCB1Q12824 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.46■□□□□ 0.71
SMARCB1Q12824 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCB1Q12824 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SMARCB1Q12824 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SMARCB1Q12824 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.46■□□□□ 0.71
SMARCB1Q12824 IGHGP-201ENST00000390555 1178 ntBASIC19.46■□□□□ 0.71
SMARCB1Q12824 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.46■□□□□ 0.71
SMARCB1Q12824 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.46■□□□□ 0.71
SMARCB1Q12824 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.46■□□□□ 0.71
SMARCB1Q12824 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.46■□□□□ 0.71
SMARCB1Q12824 KRT126P-201ENST00000549467 1181 ntBASIC19.46■□□□□ 0.71
SMARCB1Q12824 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.46■□□□□ 0.71
SMARCB1Q12824 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.46■□□□□ 0.71
SMARCB1Q12824 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCB1Q12824 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.46■□□□□ 0.71
SMARCB1Q12824 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCB1Q12824 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCB1Q12824 Z83836.1-201ENST00000624605 1642 ntBASIC19.46■□□□□ 0.71
SMARCB1Q12824 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCB1Q12824 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.46■□□□□ 0.71
SMARCB1Q12824 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
SMARCB1Q12824 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCB1Q12824 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SMARCB1Q12824 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.46■□□□□ 0.71
SMARCB1Q12824 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCB1Q12824 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.45■□□□□ 0.7
SMARCB1Q12824 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCB1Q12824 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCB1Q12824 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCB1Q12824 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.45■□□□□ 0.7
SMARCB1Q12824 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.45■□□□□ 0.7
SMARCB1Q12824 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCB1Q12824 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCB1Q12824 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SMARCB1Q12824 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.45■□□□□ 0.7
SMARCB1Q12824 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCB1Q12824 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCB1Q12824 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCB1Q12824 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCB1Q12824 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCB1Q12824 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCB1Q12824 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCB1Q12824 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.45■□□□□ 0.7
SMARCB1Q12824 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.45■□□□□ 0.7
SMARCB1Q12824 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.45■□□□□ 0.7
SMARCB1Q12824 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.45■□□□□ 0.7
SMARCB1Q12824 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.45■□□□□ 0.7
SMARCB1Q12824 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.45■□□□□ 0.7
SMARCB1Q12824 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCB1Q12824 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCB1Q12824 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCB1Q12824 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCB1Q12824 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCB1Q12824 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
SMARCB1Q12824 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SMARCB1Q12824 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
SMARCB1Q12824 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.44■□□□□ 0.7
SMARCB1Q12824 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.44■□□□□ 0.7
SMARCB1Q12824 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCB1Q12824 AC009102.3-201ENST00000623118 1491 ntBASIC19.44■□□□□ 0.7
SMARCB1Q12824 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCB1Q12824 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.44■□□□□ 0.7
SMARCB1Q12824 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCB1Q12824 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCB1Q12824 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
SMARCB1Q12824 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCB1Q12824 DRAXINP1-201ENST00000437611 948 ntBASIC19.44■□□□□ 0.7
SMARCB1Q12824 AP002383.4-201ENST00000442518 975 ntBASIC19.44■□□□□ 0.7
SMARCB1Q12824 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
SMARCB1Q12824 MIR3180-1-201ENST00000580374 94 ntBASIC19.44■□□□□ 0.7
SMARCB1Q12824 MIR3180-3-201ENST00000584616 94 ntBASIC19.44■□□□□ 0.7
SMARCB1Q12824 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
SMARCB1Q12824 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.44■□□□□ 0.7
SMARCB1Q12824 AC092119.3-201ENST00000612618 583 ntBASIC19.44■□□□□ 0.7
SMARCB1Q12824 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.44■□□□□ 0.7
SMARCB1Q12824 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCB1Q12824 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCB1Q12824 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCB1Q12824 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCB1Q12824 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms