Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 MIR4497-201ENST00000583208 89 ntBASIC16.62■□□□□ 0.25
CLRN1P58418 AC008622.2-201ENST00000617006 1229 ntBASIC16.62■□□□□ 0.25
CLRN1P58418 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC16.62■□□□□ 0.25
CLRN1P58418 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CLRN1P58418 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 AL109659.2-201ENST00000606809 1674 ntBASIC16.62■□□□□ 0.25
CLRN1P58418 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLRN1P58418 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CLRN1P58418 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC16.62■□□□□ 0.25
CLRN1P58418 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CLRN1P58418 AC090164.3-201ENST00000610780 2143 ntBASIC16.61■□□□□ 0.25
CLRN1P58418 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.61■□□□□ 0.25
CLRN1P58418 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CLRN1P58418 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
CLRN1P58418 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CLRN1P58418 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.61■□□□□ 0.25
CLRN1P58418 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
CLRN1P58418 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CLRN1P58418 AL023284.2-201ENST00000405850 579 ntBASIC16.61■□□□□ 0.25
CLRN1P58418 MIR1238-201ENST00000408483 83 ntBASIC16.61■□□□□ 0.25
CLRN1P58418 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.61■□□□□ 0.25
CLRN1P58418 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.61■□□□□ 0.25
CLRN1P58418 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
CLRN1P58418 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CLRN1P58418 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CLRN1P58418 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CLRN1P58418 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.61■□□□□ 0.25
CLRN1P58418 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CLRN1P58418 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLRN1P58418 AC079598.2-202ENST00000546624 1451 ntBASIC16.61■□□□□ 0.25
CLRN1P58418 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.6■□□□□ 0.25
CLRN1P58418 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN1P58418 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN1P58418 AC008556.1-201ENST00000610908 2040 ntBASIC16.6■□□□□ 0.25
CLRN1P58418 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
CLRN1P58418 AC104581.1-202ENST00000635932 2618 ntBASIC16.6■□□□□ 0.25
CLRN1P58418 GPAT2P1-201ENST00000444924 1672 ntBASIC16.6■□□□□ 0.25
CLRN1P58418 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.6■□□□□ 0.25
CLRN1P58418 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN1P58418 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN1P58418 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN1P58418 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN1P58418 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN1P58418 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.6■□□□□ 0.25
CLRN1P58418 HIST1H2APS4-201ENST00000362070 348 ntBASIC16.6■□□□□ 0.25
CLRN1P58418 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CLRN1P58418 AL390955.1-201ENST00000428694 934 ntBASIC16.6■□□□□ 0.25
CLRN1P58418 AL355075.4-201ENST00000554988 638 ntBASIC16.6■□□□□ 0.25
CLRN1P58418 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN1P58418 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN1P58418 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN1P58418 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN1P58418 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.6■□□□□ 0.25
CLRN1P58418 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.6■□□□□ 0.25
CLRN1P58418 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.6■□□□□ 0.25
CLRN1P58418 AC112777.1-201ENST00000540175 1423 ntBASIC16.6■□□□□ 0.25
CLRN1P58418 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CLRN1P58418 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CLRN1P58418 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.6■□□□□ 0.25
CLRN1P58418 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN1P58418 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLRN1P58418 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
CLRN1P58418 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.59■□□□□ 0.25
CLRN1P58418 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN1P58418 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN1P58418 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN1P58418 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN1P58418 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN1P58418 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC16.59■□□□□ 0.25
CLRN1P58418 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.59■□□□□ 0.25
CLRN1P58418 SLC25A1P2-201ENST00000430693 912 ntBASIC16.59■□□□□ 0.25
CLRN1P58418 CCR12P-201ENST00000446203 998 ntBASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms