Protein–RNA interactions for Protein: P20807

CAPN3, Calpain-3, humanhuman

Predictions only

Length 821 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3P20807 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CAPN3P20807 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.91■□□□□ 0.46
CAPN3P20807 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CAPN3P20807 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.91■□□□□ 0.46
CAPN3P20807 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CAPN3P20807 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CAPN3P20807 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
CAPN3P20807 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
CAPN3P20807 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CAPN3P20807 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
CAPN3P20807 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.91■□□□□ 0.46
CAPN3P20807 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CAPN3P20807 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CAPN3P20807 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CAPN3P20807 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CAPN3P20807 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CAPN3P20807 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CAPN3P20807 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CAPN3P20807 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.91■□□□□ 0.46
CAPN3P20807 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CAPN3P20807 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.9■□□□□ 0.46
CAPN3P20807 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CAPN3P20807 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CAPN3P20807 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CAPN3P20807 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
CAPN3P20807 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CAPN3P20807 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CAPN3P20807 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CAPN3P20807 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.9■□□□□ 0.46
CAPN3P20807 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CAPN3P20807 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CAPN3P20807 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CAPN3P20807 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.9■□□□□ 0.46
CAPN3P20807 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.9■□□□□ 0.46
CAPN3P20807 POM121L13P-201ENST00000422362 380 ntBASIC17.9■□□□□ 0.46
CAPN3P20807 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.9■□□□□ 0.46
CAPN3P20807 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.9■□□□□ 0.46
CAPN3P20807 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
CAPN3P20807 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.9■□□□□ 0.46
CAPN3P20807 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
CAPN3P20807 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.9■□□□□ 0.46
CAPN3P20807 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.9■□□□□ 0.46
CAPN3P20807 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CAPN3P20807 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
CAPN3P20807 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CAPN3P20807 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CAPN3P20807 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CAPN3P20807 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CAPN3P20807 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CAPN3P20807 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CAPN3P20807 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
CAPN3P20807 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CAPN3P20807 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CAPN3P20807 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CAPN3P20807 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CAPN3P20807 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CAPN3P20807 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CAPN3P20807 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CAPN3P20807 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CAPN3P20807 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.89■□□□□ 0.45
CAPN3P20807 Z85996.1-201ENST00000494644 937 ntBASIC17.89■□□□□ 0.45
CAPN3P20807 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.89■□□□□ 0.45
CAPN3P20807 PRKY-204ENST00000533551 1019 ntBASIC17.89■□□□□ 0.45
CAPN3P20807 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.89■□□□□ 0.45
CAPN3P20807 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
CAPN3P20807 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.89■□□□□ 0.45
CAPN3P20807 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CAPN3P20807 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CAPN3P20807 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CAPN3P20807 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CAPN3P20807 AC020916.1-201ENST00000587762 1774 ntBASIC17.89■□□□□ 0.45
CAPN3P20807 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CAPN3P20807 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.89■□□□□ 0.45
CAPN3P20807 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CAPN3P20807 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CAPN3P20807 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.88■□□□□ 0.45
CAPN3P20807 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CAPN3P20807 KRT8P32-201ENST00000512863 1461 ntBASIC17.88■□□□□ 0.45
CAPN3P20807 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CAPN3P20807 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CAPN3P20807 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CAPN3P20807 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CAPN3P20807 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CAPN3P20807 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
CAPN3P20807 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.88■□□□□ 0.45
CAPN3P20807 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.88■□□□□ 0.45
CAPN3P20807 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CAPN3P20807 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CAPN3P20807 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CAPN3P20807 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
CAPN3P20807 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CAPN3P20807 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.88■□□□□ 0.45
CAPN3P20807 AC087499.1-201ENST00000418141 1075 ntBASIC17.88■□□□□ 0.45
CAPN3P20807 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CAPN3P20807 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CAPN3P20807 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.88■□□□□ 0.45
CAPN3P20807 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.88■□□□□ 0.45
CAPN3P20807 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CAPN3P20807 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CAPN3P20807 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms