Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDKL5O76039 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CDKL5O76039 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.6■■□□□ 1.05
CDKL5O76039 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC21.6■■□□□ 1.05
CDKL5O76039 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC21.6■■□□□ 1.05
CDKL5O76039 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC21.6■■□□□ 1.05
CDKL5O76039 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
CDKL5O76039 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CDKL5O76039 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CDKL5O76039 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CDKL5O76039 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21.6■■□□□ 1.05
CDKL5O76039 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC21.59■■□□□ 1.05
CDKL5O76039 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDKL5O76039 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.59■■□□□ 1.05
CDKL5O76039 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
CDKL5O76039 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CDKL5O76039 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CDKL5O76039 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.59■■□□□ 1.05
CDKL5O76039 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDKL5O76039 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.59■■□□□ 1.05
CDKL5O76039 HOXB1-202ENST00000577092 1414 ntBASIC21.59■■□□□ 1.05
CDKL5O76039 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
CDKL5O76039 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CDKL5O76039 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC21.59■■□□□ 1.05
CDKL5O76039 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
CDKL5O76039 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDKL5O76039 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
CDKL5O76039 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDKL5O76039 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.58■■□□□ 1.05
CDKL5O76039 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.58■■□□□ 1.05
CDKL5O76039 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
CDKL5O76039 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDKL5O76039 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.58■■□□□ 1.05
CDKL5O76039 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDKL5O76039 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDKL5O76039 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.58■■□□□ 1.05
CDKL5O76039 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CDKL5O76039 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDKL5O76039 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDKL5O76039 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC21.58■■□□□ 1.05
CDKL5O76039 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
CDKL5O76039 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CDKL5O76039 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDKL5O76039 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
CDKL5O76039 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
CDKL5O76039 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CDKL5O76039 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
CDKL5O76039 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CDKL5O76039 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
CDKL5O76039 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CDKL5O76039 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CDKL5O76039 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
CDKL5O76039 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.04
CDKL5O76039 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.57■■□□□ 1.04
CDKL5O76039 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
CDKL5O76039 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 KRT8P50-201ENST00000562022 1438 ntBASIC21.57■■□□□ 1.04
CDKL5O76039 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC21.57■■□□□ 1.04
CDKL5O76039 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.57■■□□□ 1.04
CDKL5O76039 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.57■■□□□ 1.04
CDKL5O76039 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC21.57■■□□□ 1.04
CDKL5O76039 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
CDKL5O76039 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC21.57■■□□□ 1.04
CDKL5O76039 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.57■■□□□ 1.04
CDKL5O76039 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.57■■□□□ 1.04
CDKL5O76039 AL162741.1-201ENST00000565563 1558 ntBASIC21.57■■□□□ 1.04
CDKL5O76039 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDKL5O76039 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC21.56■■□□□ 1.04
CDKL5O76039 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDKL5O76039 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDKL5O76039 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDKL5O76039 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDKL5O76039 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
CDKL5O76039 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CDKL5O76039 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDKL5O76039 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CDKL5O76039 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.56■■□□□ 1.04
CDKL5O76039 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.56■■□□□ 1.04
CDKL5O76039 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.56■■□□□ 1.04
CDKL5O76039 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CDKL5O76039 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CDKL5O76039 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.56■■□□□ 1.04
CDKL5O76039 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDKL5O76039 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.56■■□□□ 1.04
CDKL5O76039 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms