Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MMP28Q9H239 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MMP28Q9H239 RGMA-211ENST00000557420 989 ntTSL 3 BASIC16.43■□□□□ 0.22
MMP28Q9H239 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC16.43■□□□□ 0.22
MMP28Q9H239 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC16.43■□□□□ 0.22
MMP28Q9H239 AC092118.2-201ENST00000613495 667 ntBASIC16.43■□□□□ 0.22
MMP28Q9H239 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC16.43■□□□□ 0.22
MMP28Q9H239 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MMP28Q9H239 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MMP28Q9H239 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
MMP28Q9H239 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MMP28Q9H239 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.43■□□□□ 0.22
MMP28Q9H239 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MMP28Q9H239 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
MMP28Q9H239 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MMP28Q9H239 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
MMP28Q9H239 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MMP28Q9H239 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC16.43■□□□□ 0.22
MMP28Q9H239 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.43■□□□□ 0.22
MMP28Q9H239 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
MMP28Q9H239 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
MMP28Q9H239 AL162741.1-201ENST00000565563 1558 ntBASIC16.43■□□□□ 0.22
MMP28Q9H239 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
MMP28Q9H239 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.42■□□□□ 0.22
MMP28Q9H239 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.42■□□□□ 0.22
MMP28Q9H239 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC16.42■□□□□ 0.22
MMP28Q9H239 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.42■□□□□ 0.22
MMP28Q9H239 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
MMP28Q9H239 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC16.42■□□□□ 0.22
MMP28Q9H239 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
MMP28Q9H239 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 MIR4758-201ENST00000577688 71 ntBASIC16.42■□□□□ 0.22
MMP28Q9H239 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC16.42■□□□□ 0.22
MMP28Q9H239 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC16.42■□□□□ 0.22
MMP28Q9H239 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.42■□□□□ 0.22
MMP28Q9H239 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.42■□□□□ 0.22
MMP28Q9H239 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.42■□□□□ 0.22
MMP28Q9H239 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
MMP28Q9H239 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
MMP28Q9H239 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
MMP28Q9H239 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.41■□□□□ 0.22
MMP28Q9H239 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.41■□□□□ 0.22
MMP28Q9H239 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC16.41■□□□□ 0.22
MMP28Q9H239 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 AC069152.1-201ENST00000438030 544 ntBASIC16.41■□□□□ 0.22
MMP28Q9H239 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC16.41■□□□□ 0.22
MMP28Q9H239 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
MMP28Q9H239 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC16.41■□□□□ 0.22
MMP28Q9H239 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC16.41■□□□□ 0.22
MMP28Q9H239 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 AC108860.2-201ENST00000562760 2183 ntBASIC16.41■□□□□ 0.22
MMP28Q9H239 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
MMP28Q9H239 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.41■□□□□ 0.22
MMP28Q9H239 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MMP28Q9H239 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
MMP28Q9H239 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
MMP28Q9H239 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms