Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 HLA-F-220ENST00000434407 884 ntBASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 IRX1P1-201ENST00000438849 1838 ntBASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 AC141586.3-201ENST00000562166 1838 ntBASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 AC008556.1-201ENST00000610908 2040 ntBASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
TRAIPQ9BWF2 FP475955.4-201ENST00000623131 1990 ntBASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 MIR564-202ENST00000385049 94 ntBASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 AC104390.1-201ENST00000555663 520 ntBASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAIPQ9BWF2 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 AC093458.2-201ENST00000623150 629 ntBASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 AC079602.3-201ENST00000623931 403 ntBASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
TRAIPQ9BWF2 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TRAIPQ9BWF2 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms