Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 TREX1-205ENST00000625293 1783 ntBASIC13.01□□□□□ -0.33
VPS25Q9BRG1 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
VPS25Q9BRG1 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13□□□□□ -0.33
VPS25Q9BRG1 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13□□□□□ -0.33
VPS25Q9BRG1 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
VPS25Q9BRG1 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC13□□□□□ -0.33
VPS25Q9BRG1 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC13□□□□□ -0.33
VPS25Q9BRG1 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
VPS25Q9BRG1 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
VPS25Q9BRG1 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC13□□□□□ -0.33
VPS25Q9BRG1 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
VPS25Q9BRG1 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
VPS25Q9BRG1 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
VPS25Q9BRG1 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC13□□□□□ -0.33
VPS25Q9BRG1 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS25Q9BRG1 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 ZNRF2P2-203ENST00000454624 420 ntBASIC12.99□□□□□ -0.33
VPS25Q9BRG1 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 GDI1-215ENST00000630693 786 ntTSL 4 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 AC011484.1-201ENST00000377652 1995 ntBASIC12.99□□□□□ -0.33
VPS25Q9BRG1 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS25Q9BRG1 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
VPS25Q9BRG1 FRMD6-AS1-201ENST00000617151 2229 ntBASIC12.98□□□□□ -0.33
VPS25Q9BRG1 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
VPS25Q9BRG1 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
VPS25Q9BRG1 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
VPS25Q9BRG1 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms