Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USHBP1Q8N6Y0 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 DFFB-203ENST00000341385 572 ntTSL 5 BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 SLC25A6P4-201ENST00000586535 553 ntBASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC24.51■■□□□ 1.51
USHBP1Q8N6Y0 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USHBP1Q8N6Y0 HEIH-201ENST00000623091 1652 ntBASIC24.5■■□□□ 1.51
USHBP1Q8N6Y0 AL049812.1-201ENST00000432563 2267 ntBASIC24.5■■□□□ 1.51
USHBP1Q8N6Y0 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
USHBP1Q8N6Y0 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
USHBP1Q8N6Y0 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USHBP1Q8N6Y0 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC24.5■■□□□ 1.51
USHBP1Q8N6Y0 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC24.5■■□□□ 1.51
USHBP1Q8N6Y0 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
USHBP1Q8N6Y0 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC24.5■■□□□ 1.51
USHBP1Q8N6Y0 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC24.5■■□□□ 1.51
USHBP1Q8N6Y0 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
USHBP1Q8N6Y0 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC24.5■■□□□ 1.51
USHBP1Q8N6Y0 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC24.5■■□□□ 1.51
USHBP1Q8N6Y0 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC24.5■■□□□ 1.51
USHBP1Q8N6Y0 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 ABR-204ENST00000543210 1049 ntTSL 2 BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 AL353801.3-201ENST00000609898 542 ntBASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 AL353692.3-201ENST00000407031 1396 ntBASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 NSUN5P1-202ENST00000421140 1535 ntBASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 NSUN5P2-203ENST00000457352 1529 ntBASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USHBP1Q8N6Y0 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 AC079776.4-201ENST00000511039 504 ntBASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 Z69720.1-201ENST00000601483 472 ntBASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC24.48■■□□□ 1.51
USHBP1Q8N6Y0 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC24.47■■□□□ 1.51
USHBP1Q8N6Y0 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms