Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 AC026471.1-201ENST00000564629 3026 ntBASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTCHD3Q3KNS1 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 KRT18P35-201ENST00000510488 1269 ntBASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 AC116562.4-202ENST00000641738 218 ntBASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PTCHD3Q3KNS1 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 AL499627.1-201ENST00000569373 2188 ntBASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 CCR12P-201ENST00000446203 998 ntBASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 AC008556.1-201ENST00000610908 2040 ntBASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 GPAT2P1-201ENST00000444924 1672 ntBASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 AL109659.2-201ENST00000606809 1674 ntBASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PTCHD3Q3KNS1 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 AL023284.2-201ENST00000405850 579 ntBASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 AC104076.2-201ENST00000448912 469 ntBASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD3Q3KNS1 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms