Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HTTP42858 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.9■□□□□ 0.94
HTTP42858 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20.9■□□□□ 0.94
HTTP42858 WBP2-203ENST00000433525 928 ntTSL 2 BASIC20.9■□□□□ 0.94
HTTP42858 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
HTTP42858 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC20.9■□□□□ 0.94
HTTP42858 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
HTTP42858 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.9■□□□□ 0.94
HTTP42858 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.9■□□□□ 0.94
HTTP42858 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HTTP42858 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HTTP42858 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.94
HTTP42858 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.89■□□□□ 0.94
HTTP42858 AL596442.2-201ENST00000610240 980 ntBASIC20.89■□□□□ 0.94
HTTP42858 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
HTTP42858 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HTTP42858 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.89■□□□□ 0.93
HTTP42858 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HTTP42858 AC024563.2-201ENST00000603282 481 ntBASIC20.89■□□□□ 0.93
HTTP42858 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HTTP42858 AP005117.1-201ENST00000584346 1413 ntBASIC20.89■□□□□ 0.93
HTTP42858 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
HTTP42858 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
HTTP42858 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HTTP42858 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC20.89■□□□□ 0.93
HTTP42858 AC021087.4-201ENST00000563761 564 ntBASIC20.89■□□□□ 0.93
HTTP42858 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HTTP42858 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HTTP42858 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.88■□□□□ 0.93
HTTP42858 RCC2P3-201ENST00000418112 1537 ntBASIC20.88■□□□□ 0.93
HTTP42858 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.88■□□□□ 0.93
HTTP42858 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.88■□□□□ 0.93
HTTP42858 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HTTP42858 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HTTP42858 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.88■□□□□ 0.93
HTTP42858 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.88■□□□□ 0.93
HTTP42858 MIR3180-4-201ENST00000582223 153 ntBASIC20.88■□□□□ 0.93
HTTP42858 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC20.88■□□□□ 0.93
HTTP42858 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HTTP42858 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
HTTP42858 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.88■□□□□ 0.93
HTTP42858 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
HTTP42858 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
HTTP42858 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HTTP42858 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC20.88■□□□□ 0.93
HTTP42858 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC20.88■□□□□ 0.93
HTTP42858 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC20.88■□□□□ 0.93
HTTP42858 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC20.88■□□□□ 0.93
HTTP42858 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
HTTP42858 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HTTP42858 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HTTP42858 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.88■□□□□ 0.93
HTTP42858 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
HTTP42858 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.87■□□□□ 0.93
HTTP42858 AC099778.1-201ENST00000568593 1911 ntBASIC20.87■□□□□ 0.93
HTTP42858 AC020907.5-201ENST00000624372 1936 ntBASIC20.87■□□□□ 0.93
HTTP42858 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HTTP42858 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC20.87■□□□□ 0.93
HTTP42858 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC20.87■□□□□ 0.93
HTTP42858 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
HTTP42858 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HTTP42858 AC006333.2-201ENST00000607957 2099 ntBASIC20.87■□□□□ 0.93
HTTP42858 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.87■□□□□ 0.93
HTTP42858 CCDC74BP1-201ENST00000508880 1123 ntBASIC20.87■□□□□ 0.93
HTTP42858 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC20.87■□□□□ 0.93
HTTP42858 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC20.87■□□□□ 0.93
HTTP42858 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC20.87■□□□□ 0.93
HTTP42858 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HTTP42858 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HTTP42858 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
HTTP42858 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
HTTP42858 HLA-J-201ENST00000462773 1622 ntBASIC20.86■□□□□ 0.93
HTTP42858 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HTTP42858 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HTTP42858 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC20.86■□□□□ 0.93
HTTP42858 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC20.86■□□□□ 0.93
HTTP42858 AC007967.2-201ENST00000432613 625 ntBASIC20.86■□□□□ 0.93
HTTP42858 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HTTP42858 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.86■□□□□ 0.93
HTTP42858 AC011840.4-201ENST00000578471 627 ntBASIC20.86■□□□□ 0.93
HTTP42858 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.86■□□□□ 0.93
HTTP42858 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.86■□□□□ 0.93
HTTP42858 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.86■□□□□ 0.93
HTTP42858 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
HTTP42858 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HTTP42858 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.86■□□□□ 0.93
HTTP42858 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HTTP42858 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.86■□□□□ 0.93
HTTP42858 RBSN-204ENST00000449050 903 ntTSL 2 BASIC20.86■□□□□ 0.93
HTTP42858 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC20.86■□□□□ 0.93
HTTP42858 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC20.86■□□□□ 0.93
HTTP42858 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.86■□□□□ 0.93
HTTP42858 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.86■□□□□ 0.93
HTTP42858 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HTTP42858 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.85■□□□□ 0.93
HTTP42858 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.85■□□□□ 0.93
HTTP42858 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HTTP42858 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC20.85■□□□□ 0.93
HTTP42858 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
HTTP42858 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms