Protein–RNA interactions for Protein: P19838

NFKB1, Nuclear factor NF-kappa-B p105 subunit, humanhuman

Predictions only

Length 968 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1P19838 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
NFKB1P19838 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.94■□□□□ 0.62
NFKB1P19838 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
NFKB1P19838 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.94■□□□□ 0.62
NFKB1P19838 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.94■□□□□ 0.62
NFKB1P19838 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.94■□□□□ 0.62
NFKB1P19838 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.93■□□□□ 0.62
NFKB1P19838 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
NFKB1P19838 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NFKB1P19838 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.93■□□□□ 0.62
NFKB1P19838 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.93■□□□□ 0.62
NFKB1P19838 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.93■□□□□ 0.62
NFKB1P19838 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.93■□□□□ 0.62
NFKB1P19838 INGX-201ENST00000359239 846 ntBASIC18.93■□□□□ 0.62
NFKB1P19838 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NFKB1P19838 AC007663.1-201ENST00000438948 1240 ntBASIC18.93■□□□□ 0.62
NFKB1P19838 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NFKB1P19838 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.93■□□□□ 0.62
NFKB1P19838 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.93■□□□□ 0.62
NFKB1P19838 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
NFKB1P19838 AC116562.4-202ENST00000641738 218 ntBASIC18.93■□□□□ 0.62
NFKB1P19838 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NFKB1P19838 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
NFKB1P19838 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NFKB1P19838 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.93■□□□□ 0.62
NFKB1P19838 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NFKB1P19838 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
NFKB1P19838 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NFKB1P19838 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.93■□□□□ 0.62
NFKB1P19838 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NFKB1P19838 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
NFKB1P19838 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.93■□□□□ 0.62
NFKB1P19838 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
NFKB1P19838 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
NFKB1P19838 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
NFKB1P19838 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.92■□□□□ 0.62
NFKB1P19838 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
NFKB1P19838 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
NFKB1P19838 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
NFKB1P19838 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
NFKB1P19838 MMP23A-201ENST00000234610 1017 ntBASIC18.92■□□□□ 0.62
NFKB1P19838 TSPY14P-201ENST00000303979 915 ntBASIC18.92■□□□□ 0.62
NFKB1P19838 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.92■□□□□ 0.62
NFKB1P19838 AC010947.1-201ENST00000623454 693 ntBASIC18.92■□□□□ 0.62
NFKB1P19838 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
NFKB1P19838 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
NFKB1P19838 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.92■□□□□ 0.62
NFKB1P19838 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
NFKB1P19838 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NFKB1P19838 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.91■□□□□ 0.62
NFKB1P19838 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
NFKB1P19838 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
NFKB1P19838 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
NFKB1P19838 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
NFKB1P19838 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.91■□□□□ 0.62
NFKB1P19838 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NFKB1P19838 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
NFKB1P19838 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.91■□□□□ 0.62
NFKB1P19838 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
NFKB1P19838 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.91■□□□□ 0.62
NFKB1P19838 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.91■□□□□ 0.62
NFKB1P19838 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NFKB1P19838 KRT18P41-201ENST00000518924 1277 ntBASIC18.91■□□□□ 0.62
NFKB1P19838 BX088651.1-201ENST00000540551 451 ntBASIC18.91■□□□□ 0.62
NFKB1P19838 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NFKB1P19838 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.91■□□□□ 0.62
NFKB1P19838 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
NFKB1P19838 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.91■□□□□ 0.62
NFKB1P19838 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.91■□□□□ 0.62
NFKB1P19838 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NFKB1P19838 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NFKB1P19838 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NFKB1P19838 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NFKB1P19838 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NFKB1P19838 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NFKB1P19838 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NFKB1P19838 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.9■□□□□ 0.62
NFKB1P19838 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
NFKB1P19838 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NFKB1P19838 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NFKB1P19838 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
NFKB1P19838 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NFKB1P19838 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NFKB1P19838 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms