Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SNRNP200-203ENST00000480242 3409 ntTSL 28.99□□□□□ -0.971e-8■■□□□ 13.6
YBX3P16989 HYOU1-221ENST00000621959 3358 ntTSL 2 BASIC12.99□□□□□ -0.332e-7■■□□□ 13.6
YBX3P16989 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.172e-8■■□□□ 13.6
YBX3P16989 BLOC1S5-TXNDC5-201ENST00000439343 3030 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.162e-8■■□□□ 13.6
YBX3P16989 TXNDC5-202ENST00000460138 2704 ntTSL 210.68□□□□□ -0.72e-8■■□□□ 13.6
YBX3P16989 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.132e-7■■□□□ 13.6
YBX3P16989 DHX9-203ENST00000474446 848 ntTSL 310.27□□□□□ -0.776e-13■■□□□ 13.6
YBX3P16989 AP2M1-215ENST00000468048 1172 ntTSL 1 (best)21.53■■□□□ 1.041e-10■■□□□ 13.6
YBX3P16989 YWHAZ-216ENST00000521309 1399 ntTSL 2 BASIC14.88□□□□□ -0.034e-10■■□□□ 13.6
YBX3P16989 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.274e-10■■□□□ 13.6
YBX3P16989 YWHAZ-207ENST00000395958 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.44e-10■■□□□ 13.6
YBX3P16989 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.644e-10■■□□□ 13.6
YBX3P16989 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.375e-12■■□□□ 13.6
YBX3P16989 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.885e-12■■□□□ 13.6
YBX3P16989 RAD23A-210ENST00000593114 1691 ntTSL 520.06■□□□□ 0.85e-12■■□□□ 13.6
YBX3P16989 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC16.27■□□□□ 0.25e-12■■□□□ 13.6
YBX3P16989 VAPA-208ENST00000584796 654 ntTSL 35.82□□□□□ -1.484e-8■■□□□ 13.6
YBX3P16989 ILF2-204ENST00000480213 1008 ntTSL 59.49□□□□□ -0.892e-8■■□□□ 13.6
YBX3P16989 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.436e-7■■□□□ 13.6
YBX3P16989 RFK-206ENST00000490113 2386 ntTSL 29.95□□□□□ -0.826e-7■■□□□ 13.6
YBX3P16989 NACA-210ENST00000548386 644 ntTSL 25.76□□□□□ -1.491e-56■■□□□ 13.6
YBX3P16989 LDHA-202ENST00000375710 2169 ntTSL 28.77□□□□□ -1.011e-62■■□□□ 13.6
YBX3P16989 IPO5-223ENST00000491555 3688 ntTSL 25.7□□□□□ -1.53e-8■■□□□ 13.6
YBX3P16989 MTX2-205ENST00000452865 817 ntTSL 331.06■■■□□ 2.563e-8■■□□□ 13.6
YBX3P16989 MTX2-204ENST00000443241 799 ntTSL 3 BASIC31.06■■■□□ 2.563e-8■■□□□ 13.6
YBX3P16989 MTX2-203ENST00000423461 618 ntTSL 330.8■■■□□ 2.523e-8■■□□□ 13.6
YBX3P16989 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.13e-8■■□□□ 13.6
YBX3P16989 MTX2-202ENST00000420864 1592 ntTSL 1 (best)26.52■■□□□ 1.843e-8■■□□□ 13.6
YBX3P16989 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.171e-7■■□□□ 13.6
YBX3P16989 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.051e-6■■□□□ 13.6
YBX3P16989 RSL1D1-209ENST00000573618 710 ntTSL 510.31□□□□□ -0.768e-11■■□□□ 13.6
YBX3P16989 RSL1D1-201ENST00000355674 1323 ntAPPRIS ALT2 TSL 1 (best)9.58□□□□□ -0.888e-11■■□□□ 13.6
YBX3P16989 RSL1D1-207ENST00000573029 766 ntTSL 38.01□□□□□ -1.138e-11■■□□□ 13.6
YBX3P16989 GPN3-205ENST00000547323 541 ntTSL 326.27■■□□□ 1.81e-7■■□□□ 13.6
YBX3P16989 RANGAP1-204ENST00000422838 946 ntTSL 325.89■■□□□ 1.741e-7■■□□□ 13.6
YBX3P16989 GPN3-210ENST00000552180 640 ntTSL 325.32■■□□□ 1.641e-7■■□□□ 13.6
YBX3P16989 GPN3-206ENST00000549963 497 ntTSL 318.98■□□□□ 0.631e-7■■□□□ 13.6
YBX3P16989 GPN3-208ENST00000550974 564 ntTSL 517.2■□□□□ 0.341e-7■■□□□ 13.6
YBX3P16989 RANGAP1-203ENST00000418067 650 ntTSL 314.49□□□□□ -0.091e-7■■□□□ 13.6
YBX3P16989 PDIA5-202ENST00000467157 2232 ntTSL 214.07□□□□□ -0.161e-7■■□□□ 13.6
YBX3P16989 RANGAP1-206ENST00000452543 603 ntTSL 413.67□□□□□ -0.221e-7■■□□□ 13.6
YBX3P16989 EIF4A1P2-201ENST00000422633 1220 ntBASIC10.06□□□□□ -0.81e-7■■□□□ 13.6
YBX3P16989 SEC31A-213ENST00000503937 1564 ntTSL 1 (best)7.93□□□□□ -1.143e-10■■□□□ 13.6
YBX3P16989 PDIA5-203ENST00000469649 722 ntTSL 56.99□□□□□ -1.291e-7■■□□□ 13.6
YBX3P16989 SEC31A-240ENST00000515062 597 ntTSL 36.72□□□□□ -1.333e-10■■□□□ 13.6
YBX3P16989 MARS-211ENST00000548202 796 ntTSL 221.88■■□□□ 1.092e-8■■□□□ 13.6
YBX3P16989 MARS-216ENST00000549048 755 ntTSL 321.32■■□□□ 12e-8■■□□□ 13.6
YBX3P16989 MARS-215ENST00000548944 294 ntTSL 318.96■□□□□ 0.632e-8■■□□□ 13.6
YBX3P16989 RPS4X-202ENST00000373626 594 ntTSL 310.16□□□□□ -0.781e-39■■□□□ 13.6
YBX3P16989 EWSR1-216ENST00000479135 7285 ntTSL 1 (best)10.73□□□□□ -0.692e-13■■□□□ 13.6
YBX3P16989 EHMT2-206ENST00000461880 1825 ntTSL 516.5■□□□□ 0.231e-6■■□□□ 13.6
YBX3P16989 EHMT2-202ENST00000375530 3856 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.061e-6■■□□□ 13.6
YBX3P16989 EHMT2-203ENST00000375537 3965 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.021e-6■■□□□ 13.6
YBX3P16989 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.161e-6■■□□□ 13.6
YBX3P16989 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.191e-6■■□□□ 13.6
YBX3P16989 EHMT2-211ENST00000480912 3940 ntTSL 511.35□□□□□ -0.591e-6■■□□□ 13.6
YBX3P16989 EHMT2-212ENST00000494816 3036 ntTSL 511.2□□□□□ -0.621e-6■■□□□ 13.6
YBX3P16989 ZBTB44-207ENST00000528448 539 ntTSL 48.99□□□□□ -0.975e-7■■□□□ 13.6
YBX3P16989 ADSL-210ENST00000623387 620 ntTSL 29.98□□□□□ -0.815e-6■■□□□ 13.6
YBX3P16989 TUBGCP2-205ENST00000470829 799 ntTSL 225.7■■□□□ 1.76e-10■■□□□ 13.6
YBX3P16989 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.54■□□□□ 0.246e-10■■□□□ 13.6
YBX3P16989 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.26e-10■■□□□ 13.6
YBX3P16989 TUBGCP2-210ENST00000543663 4302 ntTSL 1 (best) BASIC13.2□□□□□ -0.36e-10■■□□□ 13.6
YBX3P16989 TUBGCP2-208ENST00000482278 3553 ntTSL 212.53□□□□□ -0.46e-10■■□□□ 13.6
YBX3P16989 TUBGCP2-201ENST00000252936 3885 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.566e-10■■□□□ 13.6
YBX3P16989 TUBGCP2-209ENST00000487796 1092 ntTSL 58.96□□□□□ -0.986e-10■■□□□ 13.6
YBX3P16989 FCGR2A-214ENST00000536731 571 ntTSL 421.45■■□□□ 1.021e-7■■□□□ 13.6
YBX3P16989 FCGR2A-206ENST00000467654 914 ntTSL 218.34■□□□□ 0.531e-7■■□□□ 13.6
YBX3P16989 FCGR2A-209ENST00000482233 444 ntTSL 212.03□□□□□ -0.481e-7■■□□□ 13.6
YBX3P16989 FCGR2A-213ENST00000497474 557 ntTSL 49.23□□□□□ -0.931e-7■■□□□ 13.6
YBX3P16989 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.953e-49■■□□□ 13.6
YBX3P16989 RPL32-201ENST00000273223 567 ntTSL 3 BASIC12.97□□□□□ -0.333e-49■■□□□ 13.6
YBX3P16989 RPL32-204ENST00000429711 2117 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.663e-49■■□□□ 13.6
YBX3P16989 RPL32-203ENST00000396957 1749 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.673e-49■■□□□ 13.6
YBX3P16989 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.923e-49■■□□□ 13.6
YBX3P16989 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC25.82■■□□□ 1.725e-6■■□□□ 13.6
YBX3P16989 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.385e-6■■□□□ 13.6
YBX3P16989 AUNIP-202ENST00000481602 461 ntTSL 27.4□□□□□ -1.225e-6■■□□□ 13.6
YBX3P16989 MOB1A-201ENST00000396049 4885 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.479e-9■■□□□ 13.6
YBX3P16989 POLR2E-207ENST00000590060 1052 ntTSL 522.33■■□□□ 1.172e-7■■□□□ 13.6
YBX3P16989 USP36-205ENST00000586531 898 ntTSL 337.02■■■■□ 3.521e-7■■□□□ 13.6
YBX3P16989 USP36-224ENST00000592907 543 ntTSL 232.1■■■□□ 2.731e-7■■□□□ 13.6
YBX3P16989 MRPL36-205ENST00000510999 793 ntTSL 330.93■■■□□ 2.541e-7■■□□□ 13.6
YBX3P16989 USP36-220ENST00000591942 564 ntTSL 529.43■■■□□ 2.31e-7■■□□□ 13.6
YBX3P16989 USP36-209ENST00000587783 679 ntTSL 329.14■■■□□ 2.261e-7■■□□□ 13.6
YBX3P16989 USP36-212ENST00000588365 546 ntTSL 427.28■■□□□ 1.961e-7■■□□□ 13.6
YBX3P16989 USP36-216ENST00000589424 970 ntTSL 5 BASIC27.17■■□□□ 1.941e-7■■□□□ 13.6
YBX3P16989 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71e-7■■□□□ 13.6
YBX3P16989 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC24.95■■□□□ 1.591e-7■■□□□ 13.6
YBX3P16989 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.141e-7■■□□□ 13.6
YBX3P16989 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.851e-7■■□□□ 13.6
YBX3P16989 USP36-222ENST00000592275 594 ntTSL 419.72■□□□□ 0.751e-7■■□□□ 13.6
YBX3P16989 USP36-206ENST00000586896 696 ntTSL 519.08■□□□□ 0.641e-7■■□□□ 13.6
YBX3P16989 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.35■□□□□ 0.371e-7■■□□□ 13.6
YBX3P16989 MRPL36-201ENST00000382647 587 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.091e-7■■□□□ 13.6
YBX3P16989 USP36-210ENST00000588086 3187 ntAPPRIS ALT2 TSL 1 (best)15.46■□□□□ 0.071e-7■■□□□ 13.6
YBX3P16989 HMGXB3-203ENST00000510472 580 ntTSL 215.29■□□□□ 0.041e-7■■□□□ 13.6
YBX3P16989 USP36-214ENST00000589225 5885 ntTSL 1 (best)14.73□□□□□ -0.051e-7■■□□□ 13.6
YBX3P16989 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.051e-7■■□□□ 13.6
YBX3P16989 SMIM7-204ENST00000461488 569 ntTSL 312.75□□□□□ -0.371e-7■■□□□ 13.6
Retrieved 100 of 29,075 protein–RNA pairs in 282.1 ms