Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
COL2A1P02458 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 AC106795.1-205ENST00000512851 1056 ntBASIC21.71■■□□□ 1.07
COL2A1P02458 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC21.71■■□□□ 1.07
COL2A1P02458 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 PCDHAC2-203ENST00000615316 3011 ntBASIC21.71■■□□□ 1.07
COL2A1P02458 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.71■■□□□ 1.07
COL2A1P02458 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.71■■□□□ 1.07
COL2A1P02458 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
COL2A1P02458 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC21.71■■□□□ 1.07
COL2A1P02458 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC21.71■■□□□ 1.07
COL2A1P02458 AFG3L1P-217ENST00000557444 2447 ntBASIC21.71■■□□□ 1.07
COL2A1P02458 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 AKR1C7P-201ENST00000305623 895 ntBASIC21.71■■□□□ 1.07
COL2A1P02458 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC21.71■■□□□ 1.07
COL2A1P02458 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC21.71■■□□□ 1.07
COL2A1P02458 ABR-204ENST00000543210 1049 ntTSL 2 BASIC21.71■■□□□ 1.07
COL2A1P02458 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL2A1P02458 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
COL2A1P02458 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL2A1P02458 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL2A1P02458 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL2A1P02458 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.7■■□□□ 1.06
COL2A1P02458 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
COL2A1P02458 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL2A1P02458 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL2A1P02458 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL2A1P02458 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL2A1P02458 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
COL2A1P02458 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.7■■□□□ 1.06
COL2A1P02458 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL2A1P02458 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.7■■□□□ 1.06
COL2A1P02458 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL2A1P02458 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
COL2A1P02458 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL2A1P02458 ABR-217ENST00000572441 563 ntTSL 4 BASIC21.7■■□□□ 1.06
COL2A1P02458 IGHV3OR16-7-201ENST00000604106 360 ntBASIC21.7■■□□□ 1.06
COL2A1P02458 CCNC-219ENST00000627680 896 ntTSL 5 BASIC21.7■■□□□ 1.06
COL2A1P02458 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL2A1P02458 AL024508.2-201ENST00000607749 1894 ntBASIC21.7■■□□□ 1.06
COL2A1P02458 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL2A1P02458 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC21.69■■□□□ 1.06
COL2A1P02458 AL049812.1-201ENST00000432563 2267 ntBASIC21.69■■□□□ 1.06
COL2A1P02458 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL2A1P02458 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL2A1P02458 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL2A1P02458 CCS-201ENST00000310190 942 ntTSL 5 BASIC21.69■■□□□ 1.06
COL2A1P02458 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
COL2A1P02458 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
COL2A1P02458 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC21.69■■□□□ 1.06
COL2A1P02458 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC21.69■■□□□ 1.06
COL2A1P02458 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
COL2A1P02458 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL2A1P02458 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL2A1P02458 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL2A1P02458 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL2A1P02458 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL2A1P02458 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.68■■□□□ 1.06
COL2A1P02458 AC007952.6-201ENST00000573168 2673 ntBASIC21.68■■□□□ 1.06
COL2A1P02458 AC003957.1-201ENST00000625108 2673 ntBASIC21.68■■□□□ 1.06
COL2A1P02458 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL2A1P02458 AC005332.7-201ENST00000614046 2005 ntBASIC21.68■■□□□ 1.06
COL2A1P02458 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL2A1P02458 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.68■■□□□ 1.06
COL2A1P02458 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC21.68■■□□□ 1.06
COL2A1P02458 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL2A1P02458 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL2A1P02458 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL2A1P02458 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL2A1P02458 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC21.68■■□□□ 1.06
COL2A1P02458 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL2A1P02458 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC21.68■■□□□ 1.06
COL2A1P02458 AL160237.2-201ENST00000556165 472 ntBASIC21.68■■□□□ 1.06
COL2A1P02458 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
COL2A1P02458 BNIP3P18-201ENST00000593976 575 ntBASIC21.68■■□□□ 1.06
COL2A1P02458 AC023511.2-201ENST00000618803 211 ntBASIC21.68■■□□□ 1.06
COL2A1P02458 REXO1L6P-202ENST00000619970 1078 ntBASIC21.68■■□□□ 1.06
COL2A1P02458 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC21.68■■□□□ 1.06
COL2A1P02458 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL2A1P02458 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL2A1P02458 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL2A1P02458 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL2A1P02458 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
COL2A1P02458 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC21.67■■□□□ 1.06
COL2A1P02458 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC21.67■■□□□ 1.06
COL2A1P02458 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms