Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PROM1O43490 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PROM1O43490 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
PROM1O43490 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PROM1O43490 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PROM1O43490 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PROM1O43490 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.67■□□□□ 0.42
PROM1O43490 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.67■□□□□ 0.42
PROM1O43490 AC128688.1-201ENST00000487626 519 ntBASIC17.67■□□□□ 0.42
PROM1O43490 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PROM1O43490 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
PROM1O43490 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PROM1O43490 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PROM1O43490 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.67■□□□□ 0.42
PROM1O43490 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PROM1O43490 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.67■□□□□ 0.42
PROM1O43490 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PROM1O43490 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
PROM1O43490 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PROM1O43490 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PROM1O43490 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.67■□□□□ 0.42
PROM1O43490 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PROM1O43490 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PROM1O43490 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.66■□□□□ 0.42
PROM1O43490 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
PROM1O43490 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PROM1O43490 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PROM1O43490 MIR564-202ENST00000385049 94 ntBASIC17.66■□□□□ 0.42
PROM1O43490 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PROM1O43490 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.66■□□□□ 0.42
PROM1O43490 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PROM1O43490 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PROM1O43490 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PROM1O43490 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.66■□□□□ 0.42
PROM1O43490 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.66■□□□□ 0.42
PROM1O43490 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.66■□□□□ 0.42
PROM1O43490 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.66■□□□□ 0.42
PROM1O43490 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
PROM1O43490 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PROM1O43490 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PROM1O43490 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PROM1O43490 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.66■□□□□ 0.42
PROM1O43490 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.66■□□□□ 0.42
PROM1O43490 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PROM1O43490 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.66■□□□□ 0.42
PROM1O43490 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
PROM1O43490 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PROM1O43490 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.65■□□□□ 0.42
PROM1O43490 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PROM1O43490 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PROM1O43490 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PROM1O43490 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
PROM1O43490 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PROM1O43490 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.65■□□□□ 0.42
PROM1O43490 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.65■□□□□ 0.42
PROM1O43490 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PROM1O43490 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PROM1O43490 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.65■□□□□ 0.42
PROM1O43490 AC087499.1-201ENST00000418141 1075 ntBASIC17.65■□□□□ 0.42
PROM1O43490 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PROM1O43490 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.65■□□□□ 0.42
PROM1O43490 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.65■□□□□ 0.42
PROM1O43490 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
PROM1O43490 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PROM1O43490 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PROM1O43490 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PROM1O43490 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PROM1O43490 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PROM1O43490 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PROM1O43490 WIZP1-201ENST00000531444 2299 ntBASIC17.65■□□□□ 0.42
PROM1O43490 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.65■□□□□ 0.42
PROM1O43490 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
PROM1O43490 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.65■□□□□ 0.42
PROM1O43490 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
PROM1O43490 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
PROM1O43490 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.64■□□□□ 0.41
PROM1O43490 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PROM1O43490 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PROM1O43490 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PROM1O43490 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
PROM1O43490 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.64■□□□□ 0.41
PROM1O43490 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PROM1O43490 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
PROM1O43490 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PROM1O43490 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.64■□□□□ 0.41
PROM1O43490 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PROM1O43490 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PROM1O43490 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
PROM1O43490 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.64■□□□□ 0.41
PROM1O43490 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.64■□□□□ 0.41
PROM1O43490 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.64■□□□□ 0.41
PROM1O43490 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.64■□□□□ 0.41
PROM1O43490 MIR3180-5-201ENST00000583743 153 ntBASIC17.64■□□□□ 0.41
PROM1O43490 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.64■□□□□ 0.41
PROM1O43490 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.64■□□□□ 0.41
PROM1O43490 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.64■□□□□ 0.41
PROM1O43490 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PROM1O43490 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
PROM1O43490 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PROM1O43490 LINC01568-207ENST00000641790 1380 ntBASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms