Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN3O00409 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.95■□□□□ 0.78
FOXN3O00409 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
FOXN3O00409 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN3O00409 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.95■□□□□ 0.78
FOXN3O00409 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN3O00409 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
FOXN3O00409 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.95■□□□□ 0.78
FOXN3O00409 MIR1238-201ENST00000408483 83 ntBASIC19.95■□□□□ 0.78
FOXN3O00409 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN3O00409 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.95■□□□□ 0.78
FOXN3O00409 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.95■□□□□ 0.78
FOXN3O00409 AL353719.1-201ENST00000566847 864 ntBASIC19.95■□□□□ 0.78
FOXN3O00409 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN3O00409 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN3O00409 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN3O00409 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN3O00409 MYLKP1-201ENST00000509077 1580 ntBASIC19.95■□□□□ 0.78
FOXN3O00409 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN3O00409 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.95■□□□□ 0.78
FOXN3O00409 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN3O00409 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN3O00409 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
FOXN3O00409 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXN3O00409 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXN3O00409 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
FOXN3O00409 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.94■□□□□ 0.78
FOXN3O00409 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXN3O00409 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXN3O00409 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
FOXN3O00409 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
FOXN3O00409 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
FOXN3O00409 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXN3O00409 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.94■□□□□ 0.78
FOXN3O00409 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXN3O00409 SLC25A1P2-201ENST00000430693 912 ntBASIC19.94■□□□□ 0.78
FOXN3O00409 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.94■□□□□ 0.78
FOXN3O00409 AP003041.3-201ENST00000527151 707 ntBASIC19.94■□□□□ 0.78
FOXN3O00409 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
FOXN3O00409 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.94■□□□□ 0.78
FOXN3O00409 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
FOXN3O00409 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
FOXN3O00409 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXN3O00409 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.94■□□□□ 0.78
FOXN3O00409 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXN3O00409 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
FOXN3O00409 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXN3O00409 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
FOXN3O00409 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXN3O00409 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
FOXN3O00409 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
FOXN3O00409 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
FOXN3O00409 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
FOXN3O00409 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
FOXN3O00409 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.93■□□□□ 0.78
FOXN3O00409 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
FOXN3O00409 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
FOXN3O00409 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
FOXN3O00409 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.93■□□□□ 0.78
FOXN3O00409 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.93■□□□□ 0.78
FOXN3O00409 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.93■□□□□ 0.78
FOXN3O00409 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.93■□□□□ 0.78
FOXN3O00409 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.93■□□□□ 0.78
FOXN3O00409 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.93■□□□□ 0.78
FOXN3O00409 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
FOXN3O00409 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
FOXN3O00409 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
FOXN3O00409 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
FOXN3O00409 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
FOXN3O00409 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
FOXN3O00409 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
FOXN3O00409 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
FOXN3O00409 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
FOXN3O00409 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
FOXN3O00409 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
FOXN3O00409 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
FOXN3O00409 TSPY17P-201ENST00000450329 467 ntBASIC19.92■□□□□ 0.78
FOXN3O00409 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.92■□□□□ 0.78
FOXN3O00409 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.92■□□□□ 0.78
FOXN3O00409 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.92■□□□□ 0.78
FOXN3O00409 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
FOXN3O00409 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
FOXN3O00409 AC092338.2-201ENST00000568827 1415 ntBASIC19.92■□□□□ 0.78
FOXN3O00409 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
FOXN3O00409 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.92■□□□□ 0.78
FOXN3O00409 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
FOXN3O00409 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
FOXN3O00409 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXN3O00409 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXN3O00409 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
FOXN3O00409 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXN3O00409 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXN3O00409 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.91■□□□□ 0.78
FOXN3O00409 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXN3O00409 MIR3180-5-201ENST00000583743 153 ntBASIC19.91■□□□□ 0.78
FOXN3O00409 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.91■□□□□ 0.78
FOXN3O00409 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
FOXN3O00409 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.91■□□□□ 0.78
FOXN3O00409 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.91■□□□□ 0.78
FOXN3O00409 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms