Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 AC106820.2-201ENST00000563775 3264 ntBASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ZNF540Q8NDQ6 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ZNF540Q8NDQ6 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
ZNF540Q8NDQ6 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
ZNF540Q8NDQ6 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
ZNF540Q8NDQ6 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.27■□□□□ 0.36
ZNF540Q8NDQ6 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.27■□□□□ 0.36
ZNF540Q8NDQ6 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ZNF540Q8NDQ6 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.27■□□□□ 0.36
ZNF540Q8NDQ6 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ZNF540Q8NDQ6 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.27■□□□□ 0.36
ZNF540Q8NDQ6 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
ZNF540Q8NDQ6 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
ZNF540Q8NDQ6 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.27■□□□□ 0.36
ZNF540Q8NDQ6 AC142381.4-202ENST00000563973 229 ntBASIC17.27■□□□□ 0.36
ZNF540Q8NDQ6 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.27■□□□□ 0.35
ZNF540Q8NDQ6 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.27■□□□□ 0.35
ZNF540Q8NDQ6 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.27■□□□□ 0.35
ZNF540Q8NDQ6 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
ZNF540Q8NDQ6 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.35
ZNF540Q8NDQ6 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.27■□□□□ 0.35
ZNF540Q8NDQ6 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ZNF540Q8NDQ6 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.27■□□□□ 0.35
ZNF540Q8NDQ6 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ZNF540Q8NDQ6 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 GCSHP5-201ENST00000443090 522 ntBASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ZNF540Q8NDQ6 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 KRT17P3-201ENST00000420566 1262 ntBASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ZNF540Q8NDQ6 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms