Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 CICP6-201ENST00000457191 2729 ntBASIC16.68■□□□□ 0.26
CCDC58Q4VC31 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
CCDC58Q4VC31 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 PKD1P1-201ENST00000458669 6805 ntBASIC16.67■□□□□ 0.26
CCDC58Q4VC31 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 MIPEPP3-201ENST00000412105 444 ntBASIC16.67■□□□□ 0.26
CCDC58Q4VC31 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 OAS3-207ENST00000551007 998 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 AL050303.2-201ENST00000619798 666 ntBASIC16.67■□□□□ 0.26
CCDC58Q4VC31 HLA-B-256ENST00000639848 1089 ntBASIC16.67■□□□□ 0.26
CCDC58Q4VC31 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.67■□□□□ 0.26
CCDC58Q4VC31 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC58Q4VC31 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 AL596257.1-201ENST00000641463 2694 ntBASIC16.66■□□□□ 0.26
CCDC58Q4VC31 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 AC091874.3-201ENST00000512672 1195 ntBASIC16.66■□□□□ 0.26
CCDC58Q4VC31 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 AC092368.3-202ENST00000574180 1591 ntBASIC16.66■□□□□ 0.26
CCDC58Q4VC31 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 AC126763.1-201ENST00000552015 2118 ntBASIC16.66■□□□□ 0.26
CCDC58Q4VC31 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CCDC58Q4VC31 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CCDC58Q4VC31 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms