Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC16.41■□□□□ 0.22
CX3CR1P49238 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC16.41■□□□□ 0.22
CX3CR1P49238 MIR6786-201ENST00000616843 113 ntBASIC16.41■□□□□ 0.22
CX3CR1P49238 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC16.41■□□□□ 0.22
CX3CR1P49238 AC068587.9-201ENST00000641814 219 ntBASIC16.41■□□□□ 0.22
CX3CR1P49238 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC16.41■□□□□ 0.22
CX3CR1P49238 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CR1P49238 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.41■□□□□ 0.22
CX3CR1P49238 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.41■□□□□ 0.22
CX3CR1P49238 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CR1P49238 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.41■□□□□ 0.22
CX3CR1P49238 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CR1P49238 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CR1P49238 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CX3CR1P49238 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.4■□□□□ 0.22
CX3CR1P49238 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 MTMR9LP-203ENST00000426597 1545 ntBASIC16.4■□□□□ 0.22
CX3CR1P49238 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.4■□□□□ 0.22
CX3CR1P49238 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CX3CR1P49238 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.4■□□□□ 0.22
CX3CR1P49238 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.4■□□□□ 0.22
CX3CR1P49238 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CX3CR1P49238 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 FAM197Y1-201ENST00000421178 764 ntBASIC16.4■□□□□ 0.22
CX3CR1P49238 AC008040.2-201ENST00000461049 708 ntBASIC16.4■□□□□ 0.22
CX3CR1P49238 B3GAT3P1-201ENST00000471720 806 ntBASIC16.4■□□□□ 0.22
CX3CR1P49238 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC16.4■□□□□ 0.22
CX3CR1P49238 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC16.4■□□□□ 0.22
CX3CR1P49238 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC16.4■□□□□ 0.22
CX3CR1P49238 CKBP1-201ENST00000565489 1086 ntBASIC16.4■□□□□ 0.22
CX3CR1P49238 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.4■□□□□ 0.22
CX3CR1P49238 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.4■□□□□ 0.22
CX3CR1P49238 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 AC020916.1-201ENST00000587762 1774 ntBASIC16.4■□□□□ 0.22
CX3CR1P49238 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CX3CR1P49238 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CX3CR1P49238 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 KRT8P32-201ENST00000512863 1461 ntBASIC16.4■□□□□ 0.22
CX3CR1P49238 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
CX3CR1P49238 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CX3CR1P49238 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.4■□□□□ 0.22
CX3CR1P49238 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.4■□□□□ 0.22
CX3CR1P49238 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CR1P49238 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
CX3CR1P49238 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CX3CR1P49238 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CX3CR1P49238 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.39■□□□□ 0.21
CX3CR1P49238 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.39■□□□□ 0.21
CX3CR1P49238 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
CX3CR1P49238 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CX3CR1P49238 AC126763.1-201ENST00000552015 2118 ntBASIC16.39■□□□□ 0.21
CX3CR1P49238 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.39■□□□□ 0.21
CX3CR1P49238 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.39■□□□□ 0.21
CX3CR1P49238 AL135905.2-201ENST00000584934 1404 ntBASIC16.39■□□□□ 0.21
CX3CR1P49238 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.39■□□□□ 0.21
CX3CR1P49238 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 AL390961.4-201ENST00000623958 2535 ntBASIC16.39■□□□□ 0.21
CX3CR1P49238 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 AC005332.8-201ENST00000622750 2735 ntBASIC16.39■□□□□ 0.21
CX3CR1P49238 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 PRORSD1P-201ENST00000295112 541 ntBASIC16.39■□□□□ 0.21
CX3CR1P49238 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC16.39■□□□□ 0.21
CX3CR1P49238 AC011506.1-201ENST00000474329 610 ntBASIC16.39■□□□□ 0.21
CX3CR1P49238 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
CX3CR1P49238 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC16.39■□□□□ 0.21
CX3CR1P49238 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.39■□□□□ 0.21
CX3CR1P49238 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.39■□□□□ 0.21
CX3CR1P49238 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC16.39■□□□□ 0.21
CX3CR1P49238 AC130371.2-201ENST00000619443 611 ntBASIC16.39■□□□□ 0.21
CX3CR1P49238 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CX3CR1P49238 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CX3CR1P49238 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.39■□□□□ 0.21
CX3CR1P49238 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CX3CR1P49238 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.39■□□□□ 0.21
CX3CR1P49238 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CX3CR1P49238 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms