Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.41■□□□□ 0.7
COL6A3P12111 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A3P12111 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A3P12111 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A3P12111 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A3P12111 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.41■□□□□ 0.7
COL6A3P12111 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A3P12111 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A3P12111 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A3P12111 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A3P12111 SNX12-206ENST00000622259 661 ntTSL 5 BASIC19.41■□□□□ 0.7
COL6A3P12111 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.41■□□□□ 0.7
COL6A3P12111 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A3P12111 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
COL6A3P12111 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A3P12111 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A3P12111 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A3P12111 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A3P12111 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A3P12111 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.41■□□□□ 0.7
COL6A3P12111 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A3P12111 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.41■□□□□ 0.7
COL6A3P12111 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A3P12111 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
COL6A3P12111 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A3P12111 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
COL6A3P12111 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.41■□□□□ 0.7
COL6A3P12111 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A3P12111 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A3P12111 INTS4P1-201ENST00000438455 1935 ntBASIC19.41■□□□□ 0.7
COL6A3P12111 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A3P12111 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A3P12111 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A3P12111 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A3P12111 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A3P12111 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A3P12111 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A3P12111 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL6A3P12111 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A3P12111 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A3P12111 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
COL6A3P12111 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.4■□□□□ 0.7
COL6A3P12111 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A3P12111 AP000344.2-201ENST00000512987 629 ntBASIC19.4■□□□□ 0.7
COL6A3P12111 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A3P12111 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A3P12111 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A3P12111 AL356309.3-201ENST00000624132 1934 ntBASIC19.4■□□□□ 0.7
COL6A3P12111 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A3P12111 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
COL6A3P12111 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC19.4■□□□□ 0.7
COL6A3P12111 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A3P12111 YTHDF3-AS1-201ENST00000603538 718 ntBASIC19.4■□□□□ 0.7
COL6A3P12111 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.4■□□□□ 0.7
COL6A3P12111 AC107918.4-202ENST00000641623 219 ntBASIC19.4■□□□□ 0.7
COL6A3P12111 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A3P12111 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
COL6A3P12111 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.39■□□□□ 0.7
COL6A3P12111 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
COL6A3P12111 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A3P12111 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
COL6A3P12111 AC236430.1-201ENST00000402231 743 ntBASIC19.39■□□□□ 0.69
COL6A3P12111 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.39■□□□□ 0.69
COL6A3P12111 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.39■□□□□ 0.69
COL6A3P12111 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.39■□□□□ 0.69
COL6A3P12111 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A3P12111 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A3P12111 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.39■□□□□ 0.69
COL6A3P12111 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A3P12111 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A3P12111 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A3P12111 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A3P12111 POLD4-211ENST00000539074 714 ntTSL 3 BASIC19.39■□□□□ 0.69
COL6A3P12111 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.39■□□□□ 0.69
COL6A3P12111 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.39■□□□□ 0.69
COL6A3P12111 AL513190.1-201ENST00000621254 727 ntBASIC19.39■□□□□ 0.69
COL6A3P12111 Z98882.1-201ENST00000622160 2253 ntBASIC19.39■□□□□ 0.69
COL6A3P12111 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.39■□□□□ 0.69
COL6A3P12111 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.38■□□□□ 0.69
COL6A3P12111 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A3P12111 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A3P12111 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.38■□□□□ 0.69
COL6A3P12111 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC19.38■□□□□ 0.69
COL6A3P12111 AC093214.1-201ENST00000511688 1107 ntBASIC19.38■□□□□ 0.69
COL6A3P12111 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A3P12111 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A3P12111 HOXB1-202ENST00000577092 1414 ntBASIC19.38■□□□□ 0.69
COL6A3P12111 AL691432.2-201ENST00000607222 2038 ntBASIC19.38■□□□□ 0.69
COL6A3P12111 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A3P12111 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC19.38■□□□□ 0.69
COL6A3P12111 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A3P12111 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.38■□□□□ 0.69
COL6A3P12111 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
COL6A3P12111 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A3P12111 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A3P12111 SLC25A6P5-201ENST00000435663 894 ntBASIC19.38■□□□□ 0.69
COL6A3P12111 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.38■□□□□ 0.69
COL6A3P12111 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
COL6A3P12111 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A3P12111 AC008556.1-201ENST00000610908 2040 ntBASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms