Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.75■□□□□ 0.59
VIMP08670 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.75■□□□□ 0.59
VIMP08670 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.75■□□□□ 0.59
VIMP08670 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VIMP08670 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
VIMP08670 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
VIMP08670 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 AC138028.4-201ENST00000564984 1845 ntBASIC18.74■□□□□ 0.59
VIMP08670 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
VIMP08670 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.74■□□□□ 0.59
VIMP08670 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
VIMP08670 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
VIMP08670 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VIMP08670 AL645608.8-201ENST00000606034 2086 ntBASIC18.73■□□□□ 0.59
VIMP08670 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
VIMP08670 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.73■□□□□ 0.59
VIMP08670 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
VIMP08670 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 FER1L4-210ENST00000615531 5998 ntBASIC18.73■□□□□ 0.59
VIMP08670 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.73■□□□□ 0.59
VIMP08670 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.73■□□□□ 0.59
VIMP08670 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.73■□□□□ 0.59
VIMP08670 AL499627.1-201ENST00000569373 2188 ntBASIC18.73■□□□□ 0.59
VIMP08670 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.73■□□□□ 0.59
VIMP08670 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.73■□□□□ 0.59
VIMP08670 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.73■□□□□ 0.59
VIMP08670 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
VIMP08670 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
VIMP08670 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
VIMP08670 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VIMP08670 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
VIMP08670 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC18.72■□□□□ 0.59
VIMP08670 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
VIMP08670 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
VIMP08670 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.72■□□□□ 0.59
VIMP08670 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.72■□□□□ 0.59
VIMP08670 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.72■□□□□ 0.59
VIMP08670 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.72■□□□□ 0.59
VIMP08670 KRT18P61-201ENST00000585825 1298 ntBASIC18.72■□□□□ 0.59
VIMP08670 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.72■□□□□ 0.59
VIMP08670 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
VIMP08670 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.72■□□□□ 0.59
VIMP08670 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
VIMP08670 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.72■□□□□ 0.59
VIMP08670 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VIMP08670 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
VIMP08670 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms