Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PRKNO60260 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.35■□□□□ 0.37
PRKNO60260 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
PRKNO60260 AL357033.4-201ENST00000617703 1807 ntBASIC17.35■□□□□ 0.37
PRKNO60260 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PRKNO60260 TNXA-203ENST00000507684 2038 ntBASIC17.35■□□□□ 0.37
PRKNO60260 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PRKNO60260 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.35■□□□□ 0.37
PRKNO60260 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PRKNO60260 AC005082.1-201ENST00000413042 2259 ntBASIC17.35■□□□□ 0.37
PRKNO60260 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PRKNO60260 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PRKNO60260 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PRKNO60260 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PRKNO60260 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.34■□□□□ 0.37
PRKNO60260 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.34■□□□□ 0.37
PRKNO60260 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PRKNO60260 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PRKNO60260 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PRKNO60260 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.34■□□□□ 0.37
PRKNO60260 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.34■□□□□ 0.37
PRKNO60260 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.34■□□□□ 0.37
PRKNO60260 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.34■□□□□ 0.37
PRKNO60260 MTMR9LP-203ENST00000426597 1545 ntBASIC17.34■□□□□ 0.37
PRKNO60260 TSPY5P-201ENST00000426936 936 ntBASIC17.34■□□□□ 0.37
PRKNO60260 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PRKNO60260 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.34■□□□□ 0.37
PRKNO60260 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.34■□□□□ 0.37
PRKNO60260 AC063952.2-201ENST00000498792 1227 ntBASIC17.34■□□□□ 0.37
PRKNO60260 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PRKNO60260 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
PRKNO60260 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
PRKNO60260 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PRKNO60260 GCSHP2-201ENST00000560971 527 ntBASIC17.34■□□□□ 0.37
PRKNO60260 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PRKNO60260 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.34■□□□□ 0.37
PRKNO60260 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.34■□□□□ 0.37
PRKNO60260 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.34■□□□□ 0.37
PRKNO60260 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PRKNO60260 HEIH-201ENST00000623091 1652 ntBASIC17.34■□□□□ 0.37
PRKNO60260 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PRKNO60260 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PRKNO60260 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
PRKNO60260 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PRKNO60260 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.37
PRKNO60260 CROCCP3-202ENST00000420820 1947 ntBASIC17.33■□□□□ 0.37
PRKNO60260 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PRKNO60260 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
PRKNO60260 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.33■□□□□ 0.37
PRKNO60260 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PRKNO60260 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.33■□□□□ 0.37
PRKNO60260 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
PRKNO60260 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
PRKNO60260 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PRKNO60260 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PRKNO60260 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
PRKNO60260 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PRKNO60260 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
PRKNO60260 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.33■□□□□ 0.36
PRKNO60260 AC022616.7-201ENST00000525383 220 ntBASIC17.33■□□□□ 0.36
PRKNO60260 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.33■□□□□ 0.36
PRKNO60260 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.33■□□□□ 0.36
PRKNO60260 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.33■□□□□ 0.36
PRKNO60260 NEK4P2-201ENST00000580004 1012 ntBASIC17.33■□□□□ 0.36
PRKNO60260 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.33■□□□□ 0.36
PRKNO60260 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.33■□□□□ 0.36
PRKNO60260 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PRKNO60260 AC140113.3-201ENST00000605663 199 ntBASIC17.33■□□□□ 0.36
PRKNO60260 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
PRKNO60260 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PRKNO60260 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PRKNO60260 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
PRKNO60260 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PRKNO60260 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PRKNO60260 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PRKNO60260 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.33■□□□□ 0.36
PRKNO60260 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
PRKNO60260 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
PRKNO60260 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PRKNO60260 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PRKNO60260 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.32■□□□□ 0.36
PRKNO60260 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.32■□□□□ 0.36
PRKNO60260 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PRKNO60260 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PRKNO60260 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PRKNO60260 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PRKNO60260 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PRKNO60260 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PRKNO60260 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PRKNO60260 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PRKNO60260 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PRKNO60260 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.32■□□□□ 0.36
PRKNO60260 KRT18P38-201ENST00000449496 1282 ntBASIC17.32■□□□□ 0.36
PRKNO60260 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PRKNO60260 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.32■□□□□ 0.36
PRKNO60260 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.32■□□□□ 0.36
PRKNO60260 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.32■□□□□ 0.36
PRKNO60260 AL590326.2-201ENST00000625139 305 ntBASIC17.32■□□□□ 0.36
PRKNO60260 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PRKNO60260 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms