Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HMGN4O00479 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HMGN4O00479 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
HMGN4O00479 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGN4O00479 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGN4O00479 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGN4O00479 AC012618.2-201ENST00000428058 849 ntBASIC17.37■□□□□ 0.37
HMGN4O00479 MFAP1P1-201ENST00000442257 1255 ntBASIC17.37■□□□□ 0.37
HMGN4O00479 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGN4O00479 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.37■□□□□ 0.37
HMGN4O00479 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGN4O00479 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.37■□□□□ 0.37
HMGN4O00479 SLC25A1P4-201ENST00000567977 778 ntBASIC17.37■□□□□ 0.37
HMGN4O00479 AC233702.5-201ENST00000584107 538 ntBASIC17.37■□□□□ 0.37
HMGN4O00479 AC113410.3-201ENST00000623366 203 ntBASIC17.37■□□□□ 0.37
HMGN4O00479 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
HMGN4O00479 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HMGN4O00479 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGN4O00479 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
HMGN4O00479 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
HMGN4O00479 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
HMGN4O00479 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGN4O00479 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGN4O00479 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGN4O00479 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGN4O00479 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGN4O00479 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGN4O00479 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGN4O00479 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGN4O00479 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGN4O00479 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
HMGN4O00479 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGN4O00479 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.36■□□□□ 0.37
HMGN4O00479 KRT18P41-201ENST00000518924 1277 ntBASIC17.36■□□□□ 0.37
HMGN4O00479 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGN4O00479 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.36■□□□□ 0.37
HMGN4O00479 AL049637.2-201ENST00000641778 930 ntBASIC17.36■□□□□ 0.37
HMGN4O00479 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGN4O00479 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
HMGN4O00479 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.36■□□□□ 0.37
HMGN4O00479 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGN4O00479 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
HMGN4O00479 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGN4O00479 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGN4O00479 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGN4O00479 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
HMGN4O00479 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HMGN4O00479 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
HMGN4O00479 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.35■□□□□ 0.37
HMGN4O00479 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGN4O00479 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HMGN4O00479 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 AL023284.2-201ENST00000405850 579 ntBASIC17.35■□□□□ 0.37
HMGN4O00479 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGN4O00479 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGN4O00479 AC097488.1-201ENST00000507834 756 ntBASIC17.35■□□□□ 0.37
HMGN4O00479 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.35■□□□□ 0.37
HMGN4O00479 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.35■□□□□ 0.37
HMGN4O00479 AP001412.1-201ENST00000608405 714 ntBASIC17.35■□□□□ 0.37
HMGN4O00479 REXO1L10P-201ENST00000615707 1290 ntBASIC17.35■□□□□ 0.37
HMGN4O00479 REXO1L12P-201ENST00000622156 912 ntBASIC17.35■□□□□ 0.37
HMGN4O00479 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGN4O00479 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HMGN4O00479 GPAT2P1-201ENST00000444924 1672 ntBASIC17.35■□□□□ 0.37
HMGN4O00479 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HMGN4O00479 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.35■□□□□ 0.37
HMGN4O00479 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGN4O00479 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGN4O00479 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGN4O00479 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGN4O00479 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms