Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 IDNK-203ENST00000405990 629 ntTSL 2 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 AC133552.2-201ENST00000619106 1032 ntBASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 USP49-202ENST00000373010 2446 ntTSL 5 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 CROCCP3-202ENST00000420820 1947 ntBASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
CHKB-CPT1BH3BT56 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 LONRF2P2-201ENST00000439212 571 ntBASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 AC022413.1-201ENST00000624602 984 ntBASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 NF2-208ENST00000403435 2568 ntTSL 5 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 DUOX2-201ENST00000389039 6533 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms