Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 KATNBL1P6-202ENST00000562413 1466 ntBASIC15.14■□□□□ 0.01
FOXA2Q9Y261 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 RCC2P6-201ENST00000526625 1557 ntBASIC15.13■□□□□ 0.01
FOXA2Q9Y261 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 SRI-203ENST00000419179 1307 ntTSL 2 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
FOXA2Q9Y261 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 NOC2LP1-202ENST00000452600 2235 ntBASIC15.12■□□□□ 0.01
FOXA2Q9Y261 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 AL162741.1-201ENST00000565563 1558 ntBASIC15.12■□□□□ 0.01
FOXA2Q9Y261 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 AC004980.1-204ENST00000429707 299 ntBASIC15.12■□□□□ 0.01
FOXA2Q9Y261 PTPA-216ENST00000432651 857 ntTSL 2 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 PENK-204ENST00000518770 863 ntTSL 2 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 DECR2-212ENST00000627716 352 ntTSL 2 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC15.12■□□□□ 0.01
FOXA2Q9Y261 ABALON-201ENST00000629058 1903 ntBASIC15.11■□□□□ 0.01
FOXA2Q9Y261 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 AL355355.2-201ENST00000442321 338 ntBASIC15.11■□□□□ 0.01
FOXA2Q9Y261 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
FOXA2Q9Y261 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms