Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.47■□□□□ 0.55
MKS1Q9NXB0 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 MTDHP1-201ENST00000605323 784 ntBASIC18.46■□□□□ 0.55
MKS1Q9NXB0 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MKS1Q9NXB0 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
MKS1Q9NXB0 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 RCC2P3-201ENST00000418112 1537 ntBASIC18.45■□□□□ 0.54
MKS1Q9NXB0 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 AC008403.3-201ENST00000598924 454 ntBASIC18.45■□□□□ 0.54
MKS1Q9NXB0 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MKS1Q9NXB0 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 REXO1L9P-201ENST00000604264 2108 ntBASIC18.44■□□□□ 0.54
MKS1Q9NXB0 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 AC004980.1-204ENST00000429707 299 ntBASIC18.44■□□□□ 0.54
MKS1Q9NXB0 KRT16P5-201ENST00000455284 522 ntBASIC18.44■□□□□ 0.54
MKS1Q9NXB0 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 SIRPAP1-201ENST00000448467 1770 ntBASIC18.44■□□□□ 0.54
MKS1Q9NXB0 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MKS1Q9NXB0 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
MKS1Q9NXB0 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MKS1Q9NXB0 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
MKS1Q9NXB0 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MKS1Q9NXB0 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MKS1Q9NXB0 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
MKS1Q9NXB0 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MKS1Q9NXB0 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
MKS1Q9NXB0 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
MKS1Q9NXB0 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MKS1Q9NXB0 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms