Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
BLOC1S4Q9NUP1 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.77■□□□□ 0.92
BLOC1S4Q9NUP1 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BLOC1S4Q9NUP1 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.91
BLOC1S4Q9NUP1 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
BLOC1S4Q9NUP1 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 MYLKP1-201ENST00000509077 1580 ntBASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BLOC1S4Q9NUP1 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 HMGA1P5-201ENST00000412453 271 ntBASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 AC097493.4-201ENST00000641197 219 ntBASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 HOXB1-202ENST00000577092 1414 ntBASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.75■□□□□ 0.91
BLOC1S4Q9NUP1 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 KRT18P22-201ENST00000402024 1347 ntBASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.74■□□□□ 0.91
BLOC1S4Q9NUP1 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 AC133561.5-201ENST00000635547 218 ntBASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 MYC-208ENST00000641036 567 ntBASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.73■□□□□ 0.91
BLOC1S4Q9NUP1 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms