Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP42Q9H9J4 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP42Q9H9J4 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
USP42Q9H9J4 KRT18P23-201ENST00000435622 1283 ntBASIC23.71■■□□□ 1.39
USP42Q9H9J4 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC23.71■■□□□ 1.39
USP42Q9H9J4 AL671883.3-201ENST00000603274 991 ntBASIC23.71■■□□□ 1.39
USP42Q9H9J4 AL353801.3-201ENST00000609898 542 ntBASIC23.71■■□□□ 1.39
USP42Q9H9J4 VPS51-217ENST00000639871 243 ntTSL 5 BASIC23.71■■□□□ 1.39
USP42Q9H9J4 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP42Q9H9J4 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP42Q9H9J4 AC233702.3-201ENST00000578656 1387 ntBASIC23.71■■□□□ 1.39
USP42Q9H9J4 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
USP42Q9H9J4 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP42Q9H9J4 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
USP42Q9H9J4 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
USP42Q9H9J4 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC23.7■■□□□ 1.38
USP42Q9H9J4 LINC00167-201ENST00000530583 1419 ntBASIC23.7■■□□□ 1.38
USP42Q9H9J4 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP42Q9H9J4 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
USP42Q9H9J4 AKR1C7P-201ENST00000305623 895 ntBASIC23.7■■□□□ 1.38
USP42Q9H9J4 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP42Q9H9J4 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
USP42Q9H9J4 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
USP42Q9H9J4 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP42Q9H9J4 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC23.7■■□□□ 1.38
USP42Q9H9J4 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC23.7■■□□□ 1.38
USP42Q9H9J4 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP42Q9H9J4 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC23.7■■□□□ 1.38
USP42Q9H9J4 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC23.7■■□□□ 1.38
USP42Q9H9J4 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP42Q9H9J4 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
USP42Q9H9J4 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
USP42Q9H9J4 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP42Q9H9J4 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
USP42Q9H9J4 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC23.7■■□□□ 1.38
USP42Q9H9J4 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP42Q9H9J4 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP42Q9H9J4 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP42Q9H9J4 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
USP42Q9H9J4 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP42Q9H9J4 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP42Q9H9J4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
USP42Q9H9J4 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP42Q9H9J4 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP42Q9H9J4 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
USP42Q9H9J4 AC079776.4-201ENST00000511039 504 ntBASIC23.69■■□□□ 1.38
USP42Q9H9J4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC23.69■■□□□ 1.38
USP42Q9H9J4 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC23.69■■□□□ 1.38
USP42Q9H9J4 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC23.69■■□□□ 1.38
USP42Q9H9J4 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC23.69■■□□□ 1.38
USP42Q9H9J4 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
USP42Q9H9J4 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP42Q9H9J4 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC23.69■■□□□ 1.38
USP42Q9H9J4 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP42Q9H9J4 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
USP42Q9H9J4 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC23.69■■□□□ 1.38
USP42Q9H9J4 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP42Q9H9J4 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC23.69■■□□□ 1.38
USP42Q9H9J4 HLA-A-201ENST00000376802 1334 ntBASIC23.69■■□□□ 1.38
USP42Q9H9J4 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
USP42Q9H9J4 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC23.68■■□□□ 1.38
USP42Q9H9J4 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP42Q9H9J4 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP42Q9H9J4 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP42Q9H9J4 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP42Q9H9J4 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC23.68■■□□□ 1.38
USP42Q9H9J4 AP003733.1-201ENST00000491725 852 ntBASIC23.68■■□□□ 1.38
USP42Q9H9J4 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP42Q9H9J4 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
USP42Q9H9J4 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC23.68■■□□□ 1.38
USP42Q9H9J4 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
USP42Q9H9J4 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC23.68■■□□□ 1.38
USP42Q9H9J4 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
USP42Q9H9J4 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC23.68■■□□□ 1.38
USP42Q9H9J4 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP42Q9H9J4 AC008556.1-201ENST00000610908 2040 ntBASIC23.68■■□□□ 1.38
USP42Q9H9J4 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP42Q9H9J4 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
USP42Q9H9J4 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC23.68■■□□□ 1.38
USP42Q9H9J4 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP42Q9H9J4 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC23.67■■□□□ 1.38
USP42Q9H9J4 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC23.67■■□□□ 1.38
USP42Q9H9J4 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
USP42Q9H9J4 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC23.67■■□□□ 1.38
USP42Q9H9J4 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP42Q9H9J4 DFFB-203ENST00000341385 572 ntTSL 5 BASIC23.67■■□□□ 1.38
USP42Q9H9J4 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC23.67■■□□□ 1.38
USP42Q9H9J4 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC23.67■■□□□ 1.38
USP42Q9H9J4 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC23.67■■□□□ 1.38
USP42Q9H9J4 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC23.67■■□□□ 1.38
USP42Q9H9J4 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC23.67■■□□□ 1.38
USP42Q9H9J4 AC099336.1-202ENST00000602961 463 ntBASIC23.67■■□□□ 1.38
USP42Q9H9J4 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP42Q9H9J4 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
USP42Q9H9J4 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP42Q9H9J4 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP42Q9H9J4 RCC2P3-201ENST00000418112 1537 ntBASIC23.67■■□□□ 1.38
USP42Q9H9J4 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
USP42Q9H9J4 AC007952.6-201ENST00000573168 2673 ntBASIC23.67■■□□□ 1.38
USP42Q9H9J4 AC003957.1-201ENST00000625108 2673 ntBASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms