Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HPS3Q969F9 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HPS3Q969F9 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.7■□□□□ 0.9
HPS3Q969F9 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HPS3Q969F9 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.7■□□□□ 0.9
HPS3Q969F9 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.7■□□□□ 0.9
HPS3Q969F9 AP003041.3-201ENST00000527151 707 ntBASIC20.7■□□□□ 0.9
HPS3Q969F9 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.7■□□□□ 0.9
HPS3Q969F9 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HPS3Q969F9 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.7■□□□□ 0.9
HPS3Q969F9 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HPS3Q969F9 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.7■□□□□ 0.9
HPS3Q969F9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
HPS3Q969F9 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HPS3Q969F9 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.7■□□□□ 0.9
HPS3Q969F9 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HPS3Q969F9 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
HPS3Q969F9 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HPS3Q969F9 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.7■□□□□ 0.9
HPS3Q969F9 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HPS3Q969F9 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.7■□□□□ 0.9
HPS3Q969F9 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.69■□□□□ 0.9
HPS3Q969F9 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HPS3Q969F9 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HPS3Q969F9 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.69■□□□□ 0.9
HPS3Q969F9 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HPS3Q969F9 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
HPS3Q969F9 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HPS3Q969F9 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
HPS3Q969F9 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.69■□□□□ 0.9
HPS3Q969F9 AC020763.4-201ENST00000623414 4170 ntBASIC20.69■□□□□ 0.9
HPS3Q969F9 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
HPS3Q969F9 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HPS3Q969F9 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HPS3Q969F9 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.69■□□□□ 0.9
HPS3Q969F9 CA15P1-201ENST00000481698 905 ntBASIC20.69■□□□□ 0.9
HPS3Q969F9 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HPS3Q969F9 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.69■□□□□ 0.9
HPS3Q969F9 AC010947.1-201ENST00000623454 693 ntBASIC20.69■□□□□ 0.9
HPS3Q969F9 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.69■□□□□ 0.9
HPS3Q969F9 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HPS3Q969F9 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.69■□□□□ 0.9
HPS3Q969F9 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
HPS3Q969F9 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.69■□□□□ 0.9
HPS3Q969F9 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HPS3Q969F9 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HPS3Q969F9 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
HPS3Q969F9 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HPS3Q969F9 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.68■□□□□ 0.9
HPS3Q969F9 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
HPS3Q969F9 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HPS3Q969F9 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HPS3Q969F9 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
HPS3Q969F9 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HPS3Q969F9 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.68■□□□□ 0.9
HPS3Q969F9 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.68■□□□□ 0.9
HPS3Q969F9 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.68■□□□□ 0.9
HPS3Q969F9 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.68■□□□□ 0.9
HPS3Q969F9 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.68■□□□□ 0.9
HPS3Q969F9 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HPS3Q969F9 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HPS3Q969F9 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HPS3Q969F9 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.68■□□□□ 0.9
HPS3Q969F9 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HPS3Q969F9 AC036111.1-201ENST00000533973 1582 ntBASIC20.68■□□□□ 0.9
HPS3Q969F9 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HPS3Q969F9 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
HPS3Q969F9 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HPS3Q969F9 AIRN-201ENST00000601203 4374 ntBASIC20.67■□□□□ 0.9
HPS3Q969F9 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HPS3Q969F9 MCCD1P1-208ENST00000445732 328 ntBASIC20.67■□□□□ 0.9
HPS3Q969F9 AL353719.1-201ENST00000566847 864 ntBASIC20.67■□□□□ 0.9
HPS3Q969F9 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.67■□□□□ 0.9
HPS3Q969F9 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
HPS3Q969F9 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HPS3Q969F9 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HPS3Q969F9 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HPS3Q969F9 AC092338.2-201ENST00000568827 1415 ntBASIC20.67■□□□□ 0.9
HPS3Q969F9 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
HPS3Q969F9 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
HPS3Q969F9 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.67■□□□□ 0.9
HPS3Q969F9 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
HPS3Q969F9 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HPS3Q969F9 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.67■□□□□ 0.9
HPS3Q969F9 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HPS3Q969F9 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HPS3Q969F9 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HPS3Q969F9 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
HPS3Q969F9 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.66■□□□□ 0.9
HPS3Q969F9 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.66■□□□□ 0.9
HPS3Q969F9 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.66■□□□□ 0.9
HPS3Q969F9 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms