Protein–RNA interactions for Protein: Q8WWI5

SLC44A1, Choline transporter-like protein 1, humanhuman

Predictions only

Length 657 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A1Q8WWI5 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 AC020916.1-201ENST00000587762 1774 ntBASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SLC44A1Q8WWI5 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 AP003097.1-201ENST00000530657 1135 ntBASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 AC233263.1-201ENST00000578059 224 ntBASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SLC44A1Q8WWI5 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 AC008556.1-201ENST00000610908 2040 ntBASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 KRT17P3-201ENST00000420566 1262 ntBASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SLC44A1Q8WWI5 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 AC004980.1-204ENST00000429707 299 ntBASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.72■□□□□ 0.59
SLC44A1Q8WWI5 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms