Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 AC009237.3-201ENST00000393279 1427 ntBASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 EDA-201ENST00000338901 1233 ntBASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 GRAMD4P2-201ENST00000423297 1097 ntBASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 RNF146-206ENST00000480444 843 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 GRAMD4P4-201ENST00000613563 1115 ntBASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 AL162741.1-201ENST00000565563 1558 ntBASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 AL512353.2-201ENST00000448759 1962 ntBASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 AL355001.2-201ENST00000620617 1191 ntBASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 C8orf49-201ENST00000525043 1968 ntBASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CCDC28AQ8IWP9 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 AL121761.2-201ENST00000598007 1648 ntBASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 MPST-208ENST00000628507 698 ntTSL 5 BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CCDC28AQ8IWP9 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CCDC28AQ8IWP9 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CCDC28AQ8IWP9 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CCDC28AQ8IWP9 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CCDC28AQ8IWP9 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CCDC28AQ8IWP9 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms