Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.24■□□□□ 0.51
TNFP01375 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TNFP01375 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.24■□□□□ 0.51
TNFP01375 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
TNFP01375 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TNFP01375 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TNFP01375 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TNFP01375 MIR3180-4-201ENST00000582223 153 ntBASIC18.24■□□□□ 0.51
TNFP01375 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TNFP01375 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TNFP01375 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.23■□□□□ 0.51
TNFP01375 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.23■□□□□ 0.51
TNFP01375 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.23■□□□□ 0.51
TNFP01375 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
TNFP01375 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
TNFP01375 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 HEIH-201ENST00000623091 1652 ntBASIC18.23■□□□□ 0.51
TNFP01375 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 HCG4P8-203ENST00000443049 980 ntBASIC18.23■□□□□ 0.51
TNFP01375 BX276092.5-203ENST00000456199 560 ntBASIC18.23■□□□□ 0.51
TNFP01375 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.23■□□□□ 0.51
TNFP01375 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.23■□□□□ 0.51
TNFP01375 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.23■□□□□ 0.51
TNFP01375 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.23■□□□□ 0.51
TNFP01375 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.23■□□□□ 0.51
TNFP01375 AC011498.5-201ENST00000592027 486 ntBASIC18.23■□□□□ 0.51
TNFP01375 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
TNFP01375 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.23■□□□□ 0.51
TNFP01375 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
TNFP01375 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TNFP01375 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.22■□□□□ 0.51
TNFP01375 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TNFP01375 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.22■□□□□ 0.51
TNFP01375 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.22■□□□□ 0.51
TNFP01375 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
TNFP01375 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TNFP01375 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TNFP01375 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.22■□□□□ 0.51
TNFP01375 MIR662-201ENST00000384847 95 ntBASIC18.22■□□□□ 0.51
TNFP01375 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TNFP01375 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TNFP01375 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.22■□□□□ 0.51
TNFP01375 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.22■□□□□ 0.51
TNFP01375 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.22■□□□□ 0.51
TNFP01375 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.22■□□□□ 0.51
TNFP01375 AL121672.3-201ENST00000608644 468 ntBASIC18.22■□□□□ 0.51
TNFP01375 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.22■□□□□ 0.51
TNFP01375 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TNFP01375 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TNFP01375 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.22■□□□□ 0.51
TNFP01375 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.22■□□□□ 0.51
TNFP01375 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
TNFP01375 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TNFP01375 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
TNFP01375 Z98044.1-201ENST00000632503 1764 ntBASIC18.22■□□□□ 0.51
TNFP01375 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TNFP01375 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TNFP01375 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TNFP01375 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.22■□□□□ 0.51
TNFP01375 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TNFP01375 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TNFP01375 AL162741.1-201ENST00000565563 1558 ntBASIC18.21■□□□□ 0.51
TNFP01375 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.21■□□□□ 0.51
TNFP01375 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TNFP01375 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TNFP01375 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.21■□□□□ 0.51
TNFP01375 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TNFP01375 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.21■□□□□ 0.51
TNFP01375 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
TNFP01375 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TNFP01375 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TNFP01375 KRT18P48-201ENST00000434763 852 ntBASIC18.21■□□□□ 0.51
TNFP01375 AC009065.1-201ENST00000564055 1225 ntBASIC18.21■□□□□ 0.51
TNFP01375 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.21■□□□□ 0.51
TNFP01375 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.21■□□□□ 0.51
TNFP01375 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.21■□□□□ 0.51
TNFP01375 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.21■□□□□ 0.51
TNFP01375 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
TNFP01375 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.21■□□□□ 0.51
TNFP01375 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TNFP01375 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TNFP01375 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TNFP01375 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TNFP01375 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TNFP01375 AL357033.4-201ENST00000617703 1807 ntBASIC18.21■□□□□ 0.51
TNFP01375 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TNFP01375 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms