Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 KRT18P35-201ENST00000510488 1269 ntBASIC19.56■□□□□ 0.72
USP3Q9Y6I4 KRT18P41-201ENST00000518924 1277 ntBASIC19.56■□□□□ 0.72
USP3Q9Y6I4 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 NTF6B-201ENST00000591913 560 ntBASIC19.56■□□□□ 0.72
USP3Q9Y6I4 AL445228.2-201ENST00000605589 952 ntBASIC19.56■□□□□ 0.72
USP3Q9Y6I4 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP3Q9Y6I4 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 STARP1-201ENST00000397973 869 ntBASIC19.55■□□□□ 0.72
USP3Q9Y6I4 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.55■□□□□ 0.72
USP3Q9Y6I4 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.55■□□□□ 0.72
USP3Q9Y6I4 KRT18P23-201ENST00000435622 1283 ntBASIC19.55■□□□□ 0.72
USP3Q9Y6I4 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 AC104390.1-201ENST00000555663 520 ntBASIC19.55■□□□□ 0.72
USP3Q9Y6I4 LINC01238-205ENST00000567549 1107 ntBASIC19.55■□□□□ 0.72
USP3Q9Y6I4 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.55■□□□□ 0.72
USP3Q9Y6I4 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 KRT18P38-201ENST00000449496 1282 ntBASIC19.54■□□□□ 0.72
USP3Q9Y6I4 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.54■□□□□ 0.72
USP3Q9Y6I4 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP3Q9Y6I4 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 AL138781.2-201ENST00000617896 1843 ntBASIC19.53■□□□□ 0.72
USP3Q9Y6I4 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.53■□□□□ 0.72
USP3Q9Y6I4 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP3Q9Y6I4 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms